Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34
- Object-based image analysis
- C# component library
- Plugin Interface
- Open DICOM files (free plugin using ClearCanvas)
- Open jp2, scn, svs, ndpi and mrxs files (commercial plugin using Virtual Slide Access - SDK 4.0)
- C# script editor / compiler
- Image processing chain editor
- Object model editor
- 2D scatterplot
- ObjectLayer data structure for high-level formulations of algorithms
- Batch processing
- "Generic Business Client" application development tool
An okay app. Difficult to output individual contours, documentation provides little help with trying additional classification functionality, code parameters are different to those published. However, cudos should be given to the author has he made his code available. Although, I couldn't reproduce his published results with this.
Cognitionmaster is perfect! Thanks.