CNV Explorer

CNV Explorer for Gene discovery:
https://arraycgh.shinyapps.io/CNV_Explorer/

CNV Explorer for survival analysis:
https://arraycgh.shinyapps.io/CNV_Explorer_Survival/

CNV_Explorer is a data mining tool for cancer researchers interested in the structural and copy number changes that happen in cancer genomes.

Huge volumes of genomics data from nearly every cancer type are now freely available and several online databases have begun to collate and store this information. However, current tools focus on individual gene queries rather than chromosomal and region-based queries more relevant to some researchers. CNV_Explorer creates interactive CNV frequency, GISTIC-style and breakage frequency plots from public (or your own) data. CNV_Explorer is written in R and Perl and can be deployed online using ShinyApps.io .

CNV_Explorer is available under the GNU public license (GPL-3).

Check the Wiki for details on how to run your own CNV_Explorer instance!

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