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Name Modified Size InfoDownloads / Week
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README.md 2021-08-06 1.6 kB
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CIRIquant_v1.1.2.zip 2021-03-09 47.1 kB
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CIRIquant_v1.1.1.tar.gz 2020-07-15 206.5 kB
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CIRIquant_v1.1.tar.gz 2020-04-16 200.3 kB
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CIRIquant_v1.0.2.tar.gz 2020-04-07 192.9 kB
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CIRIquant_v1.0.1.tar.gz 2020-03-04 173.2 kB
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CIRIquant_v1.0.tar.gz 2019-11-29 172.4 kB
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test_data.tar.gz 2019-10-08 85.1 MB
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Totals: 8 Items   86.1 MB 0

CIRIquant

Build Status GitHub release (latest by date) The MIT License GitHub All Releases SourceForge Documentation Status

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

Documentation

Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest/

Author

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

Release Notes

  • Version 1.1: Added support for stranded library and GFF3 format input.
  • Version 1.0: The first released version of CIRIquant.

License

The code is released under the MIT License. See the LICENSE file for more detail.

Citing CIRIquant

  • Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9
Source: README.md, updated 2021-08-06