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CIRI_Full_v2.1.1.jar (76.1 kB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| CIRI-full | 2021-08-11 | ||
| CIRIquant | 2021-08-06 | ||
| CIRI-long | 2021-04-22 | ||
| CIRI-vis | 2021-03-09 | ||
| circAtlas | 2021-03-09 | ||
| CIRI-AS | 2018-06-22 | ||
| CIRI2 | 2017-06-13 | ||
| CIRI_simulator.pl | 2017-03-21 | 19.8 kB | |
| README | 2016-06-21 | 1.2 kB | |
| Figure3.tiff | 2015-02-04 | 690.7 kB | |
| CIRI_v1.2.pl | 2015-02-04 | 60.8 kB | |
| CIRI_v1.2_manual.txt | 2014-11-20 | 13.3 kB | |
| CIRI_v1.1.pl | 2014-08-26 | 55.8 kB | |
| CIRIsimulator.pl | 2014-08-08 | 12.4 kB | |
| test_data.zip | 2014-08-07 | 84.1 MB | |
| CIRI_v1.1_manual.txt | 2014-08-07 | 11.9 kB | |
| Totals: 16 Items | 85.0 MB | 47 |
CIRI (circRNA identifier) is a novel chiastic clipping signal based algorithm, which can unbiasedly and accurately detect circRNAs from transcriptome data by employing multiple filtration strategies. Original codes and detailed manuals are included in the downloading URL: https://sourceforge.net/projects/ciri/files/. If you use CIRI, please cite the following paper: Yuan Gao†, Jinfeng Wang† and Fangqing Zhao*. CIRI: an efficient and unbiased algorithm for de novo circular RNA identification. Genome Biology (2015) 16:4. A clear Figure3 in the paper is also included here to avoid misunderstanding. CIRI-AS is a de novo detection tool for circRNA internal components and alternative splicing events based on spliced junction signatures, especially from back-spliced junction read pairs. Original codes and detailed manuals are included in the downloading URL: https://sourceforge.net/projects/ciri/files/CIRI-AS/. If you use CIRI-AS, please cite the following paper: Yuan Gao†, Jinfeng Wang†, Yi Zheng†, Jinyang Zhang, Shuai Chen and Fangqing Zhao*. Comprehensive identification of internal structure and alternative splicing events in circular RNAs. Nature Communications (2016) in press.