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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| readme | 2014-06-22 | 1.2 kB | |
| cho_1.2.zip | 2014-06-22 | 388.8 kB | |
| cho_1.1.zip | 2013-02-26 | 387.1 kB | |
| cho_1.0.zip | 2012-08-14 | 239.8 kB | |
| Totals: 4 Items | 1.0 MB | 0 |
CURRENT VERSION: 1.1
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CHECKSUM
maximal growth rate: 0.026 flux units
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CONVERSION SBML TO TEXT FILE
can be performed for example using the Cobra toolbox (http://opencobra.sf.net/) and commands
>> model = readCbModel('cho_modelNumber.xml',inf);
>> writeCbModel(model,'text','cho_modelNumber.txt');
though this is not recommended as semantic annotations may be lost.
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UPDATES
cho 1.2: 22 jun 2014
* removed FAD (s_0100) from the objective function (r_1545) as this may prevent growth. Thanks to Hyun Uk Kim for locating this issue.
cho 1.1: 26 feb 2013
* restructured as per yeast 6.0 (http://yeast.sf.net/)
* now supporting the FBC format [http://sbml.org/Community/Wiki/SBML_Level_3_Proposals/Flux_Constraints]
cho 1.0: 14 aug 2012
* semantically-annotated version of Selverasu et al (http://dx.doi.org/10.1002/bit.24445)
* structured similarly to yeast 5.0 (http://yeast.sf.net/) to facilitate comparative studies