Download rng.h (ChIP-BIT2)

Other Useful Business Software

$300 Free Credits to Build on Google Cloud

New to Google Cloud? Get $300 in credits to explore Compute Engine, BigQuery, Cloud Run, Gemini Enterprise Agent Platform, and more.

Start your next project with $300 in free Google Cloud credit. Spin up VMs, run containers, query petabytes in BigQuery, or build agents with Gemini Enterprise Agent Platform. Once your credits are used, keep building with 20+ always-free tier products including Compute Engine, Cloud Storage, GKE, and Cloud Run functions. No commitment required—just sign up and start building.

Claim $300 Free

Build Securely on AWS with Proven Frameworks

Lay a foundation for success with Tested Reference Architectures developed by Fortinet’s experts. Learn more in this white paper.

Moving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.

Download Now

Stop vibe-debugging.

Plug Claude into your app's actual errors.

AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.

Free 30 days.

99.99% Uptime for MySQL and PostgreSQL Databases

Sub-second maintenance. 2x read/write performance. Built-in vector search for AI apps.

Cloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.

Try Free

Custom VMs From 1 to 96 vCPUs With 99.95% Uptime

General-purpose, compute-optimized, or GPU/TPU-accelerated. Built to your exact specs.

Live migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.

Try Free

ChIP-BIT2 Overview

ChIP-BIT2 detects weak binding sites of TFs or HMs.

Different from traditional peak callers that detect strong peaks only, ChIP-BIT2 detects both strong and weak peaks from enhancer regions, promoter regions or the whole genome using a pair of sample and input ChIP-seq experiments. It can automatically detect both narrow and wide peaks so can be applied to detecting transcription factor binding events or histone modifications without specific settings.

ChIP-BIT2 is an extended version of the ChIP-BIT method: a method designed mainly for detecting narrow peaks in promoter regions as described in the following paper:
Xi Chen et al., "ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles", Nucleic Acids Res (2016) 44 (7): e65.

Additional Details for ChIP-BIT2

Registered

2017-03-10

Last Updated

2021-02-19

Maintainers

xichenvt

Keep Me Updated!

Get an email when this software releases a new version (no other emails will be sent). Get newsletters and notices that include site news, special offers and exclusive discounts about IT products & services.

I understand by clicking on "Subscribe" below I am agreeing to the SourceForge Terms of Use and the Privacy Policy which describe how we use and share your data. I agree to receive these communications from SourceForge.net. I understand that I can withdraw my consent at anytime.

JavaScript is required for this form.