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I'm a drug metabolism researcher. Analysis of mass spectrometry data for metabolites is often required. Colleagues recommend CFM-ID for mass spectrum structure analysis is very helpful, and I would like to try to use it.
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Great user-friendly tool!
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I tried to using cfm-anotate in vain for hours. -Documentation is minimal and outdated. -Parsing of the commands either crashes or provides minimal feedback. -Even after /finally/ figuring out how to use the commands and using both my own data and the examples from the page, the program just crashes mid-way with no clue as to what is wrong. EDIT: Finally got it to "not-crash". A suggestion: do not list a parameter as optional and then require the application to read in a default file that isn't provided with the code. Regardless, the parameter parsing is very unclean. Try some error handling for missing files/invalid data, etc. UPDATE: It does what I want now and from a research perspective it is a good tool. Generally, could by more user-friendly, especially to non-experts in the field.
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Excellent!
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Interesting stuff!
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