Download Latest Version
CellCompiler 0.3.zip (3.9 MB)
Get an email when there's a new version of CellCompiler
| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| matsuoka_sarai_kuratomi_ono_noma_2003R_Euler_v1.relml | 2011-08-03 | 51.9 kB | |
| luo_rudy_1994_RungeKutta4.relml | 2011-08-03 | 25.8 kB | |
| luo_rudy_1994_MEuler_v1.relml | 2011-08-03 | 25.8 kB | |
| luo_rudy_1994_Euler_v1.relml | 2011-08-03 | 25.8 kB | |
| luo_rudy_1991_RungeKutta4_v1.relml | 2011-08-03 | 11.6 kB | |
| luo_rudy_1991_MEuler_v1.relml | 2011-08-03 | 11.6 kB | |
| luo_rudy_1991_Euler_v1.relml | 2011-08-03 | 11.6 kB | |
| fhn_RungeKutta4_v1.relml | 2011-08-03 | 596 Bytes | |
| fhn_MEuler_v1.relml | 2011-08-03 | 594 Bytes | |
| fhn_Euler_v1.relml | 2011-08-03 | 586 Bytes | |
| dxdt_x_RungeKutta4_v1.relml | 2011-08-03 | 250 Bytes | |
| dxdt_x_RungeKutta3_v1.relml | 2011-08-03 | 250 Bytes | |
| dxdt_x_RungeKutta2_v1.relml | 2011-08-03 | 250 Bytes | |
| dxdt_x_MEuler_v1.relml | 2011-08-03 | 252 Bytes | |
| dxdt_x_Euler_v1.relml | 2011-08-03 | 244 Bytes | |
| Totals: 15 Items | 167.1 kB | 0 | |
CellMLCompiler Model Files v0.5 Contributors: Akira Amano, Florencio Rusty Punzalan, Yoshiharu Yamashita, Naoki Soejima Contact: floren@fc.ritsumei.ac.jp Requires: CellMLCompiler v.1.0 Date: 2011/08/03 This folder contains the necessary CellML, TecML, and RelML files needed to generate the C/C++, CUDA, and Java source codes for 1D/2D cell simulation. The folder also includes the XML schema used to produce the TecML and RelML files. Users may use these schemas and the sample files to produce the TecML and RelML files that they need for their simulation. Instructions in creating CellML files is already well-documented and can be found in the CellML website: www.cellml.org. == Direction == 1. Put the Model folder (with cellml, tecml, and relml folder inside) in the source folder of CellMLCompiler. 2. Check if the RelML files points to the correct filename and location of the CellML and TecML files needed for code generation. 3. Edit the target RelML file of the CellMLCompiler to generate the desired cell simulation code. == File Lists == CellML_Files dxdt_exp(t)_v1 Simple cellml code for ODE equation dx/dt = exp(t) dxdt_x_v1 Simple cellml code for ODE equation dx/dt = x fhn_v2 FitzHugh-Nagumo model cellml luo_rudy_1991_v1 Luo-Rudy 1991 (LR1) cell model (from cellml repository) luo_rudy_1994_v1 Luo-Rudy 1994 (LRD) cell model (from cellml repository) matsuoka_sarai...2003 Kyoto 2003 cell model (from cellml repository) negroni_lascano_1996_v1 Negroni-Lascano 1996 sarcomere dynamics in cell TecML_Files Euler_v2 Euler method for Ordinary Differential Equation (ODE) numerical integration Backward_Euler_v1 Backward Euler method for ODE numerical integration ModifiedEuler_v2 Modified Euler method for ODE numerical integration RungeKutta2_v2 Second order Runge-Kutta method for ODE integration RungeKutta3_v2 Third order Runge-Kutta method for ODE integration RungeKutta4_v2 Fourth order Runge-Kutta method for ODE integration RelML_Files Combination of CellML and TecML == Changelog == = 0.5 = * Listed the files on the README.