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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| FHN_MEuler.c | 2012-03-02 | 5.2 kB | |
| LuoRudy1994_C_MEuler.c | 2011-08-03 | 45.3 kB | |
| LuoRudy1994_C_Euler.c | 2011-08-03 | 24.3 kB | |
| LuoRudy1991_C_Euler.c | 2011-08-03 | 14.2 kB | |
| Kyoto2003_C_Euler.c | 2011-08-03 | 56.0 kB | |
| dxdt_x_RK4.c | 2011-08-03 | 3.9 kB | |
| dxdt_x_RK3.c | 2011-08-03 | 3.4 kB | |
| dxdt_x_RK2.c | 2011-08-03 | 2.6 kB | |
| dxdt_x_MEuler.c | 2011-08-03 | 2.7 kB | |
| dxdt_x_Euler.c | 2011-08-03 | 2.1 kB | |
| Totals: 10 Items | 159.6 kB | 0 | |
CellMLCompiler Generated Codes v0.6 Current Contributors: Florencio Rusty Punzalan, Yohei Suzuki, Shigeru Komiyama, and Akira Amano Previous Contributors: Naoki Soejima, Yoshiharu Yamashita, Masanari Kawabata Contact: floren@fc.ritsumei.ac.jp Requires: Code Compilers for C/C++, CUDA, and Java Date: 2014/11/07 This folder contains the generated codes by the CellMLCompiler for 1D/2D cell model simulation. The generated codes are stand-alone and can be tested using the necessary C/C++, CUDA, or Java compiler. Most of the files implement a 1D cell array simulation unless it specify the simulation as 2D. The implemented simulations include the Luo-Rudy (1991 and 1994) and Kyoto (Matsuoka_Sarai..._2003) cell models. == Direction == 1. Compile the C/C++ and Java codes using the necessary compilers. The recommended compiler for the C/C++ and Java codes is Eclipse CDT v7.0 and Eclipse Helios (with Java compiler), respectively. 2. To compile the CUDA codes, one needs a CUDA C/C++ compiler and a CUDA compatible GPU (www.nividia.com). The makefile for the CUDA codes are included in the CUDA_2DExcitationPropagation_version folder. 3. Specify the variable name and cell location at the end of the code to print its time-evolution calculation values. Note: Change the __DATA_NUM variable to indicate the size of the cell array in the simulation. == Folder List == C_version (PDE) Generated C code for simulating a two-dimensional array C_version Generated C code for simulating a linear array of cell CUDA_2DExcitationPropagation_version Generated CUDA codes for 2D cell model simulation C_2DExcitationPropagation_version Generated C codes for 2D cell model simulation Java_Double_version Generated Java codes using double precision Java_BigDecimal_version Generated Java codes using BigDecimal precision == Changelog == = 0.6 = * Added generated code for FHN and Luo-Rudy 1991 simulation in a square 100x100 mesh, Hund-Rudy simulation in a 50x50 square mesh. The FDM numerical scheme used for the examples is the FTCS (Forward-Time Centered Space) method. = 0.5 = * Listed the files on the README.