Bowtie 2 Files

A fast and sensitive gapped read aligner

This is an exact mirror of the Bowtie 2 project, hosted at https://github.com/BenLangmead/bowtie2. SourceForge is not affiliated with Bowtie 2.

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Name	Modified	Size	InfoDownloads / Week
Parent folder
bowtie2-2.5.3-mingw-x86_64.zip	2024-01-17	56.0 MB	0
bowtie2-2.5.3-sra-macos-arm64.zip	2024-01-17	22.9 MB	0
bowtie2-2.5.3-macos-arm64.zip	2024-01-17	17.0 MB	0
bowtie2-2.5.3-sra-macos-x86_64.zip	2024-01-17	24.2 MB	0
bowtie2-2.5.3-macos-x86_64.zip	2024-01-17	17.7 MB	0
bowtie2-2.5.3-sra-linux-x86_64.zip	2024-01-17	101.4 MB	0
bowtie2-2.5.3-sra-linux-aarch64.zip	2024-01-17	98.8 MB	0
bowtie2-2.5.3-linux-x86_64.zip	2024-01-17	94.1 MB	0
bowtie2-2.5.3-linux-aarch64.zip	2024-01-17	91.4 MB	0
README.md	2024-01-17	557 Bytes	0
v2.5.3 source code.tar.gz	2024-01-17	10.6 MB	0
v2.5.3 source code.zip	2024-01-17	10.8 MB	0
Totals: 12 Items		544.9 MB	0

Version 2.5.3 - Jan 16, 2024

Fixed an issue causing bowtie2's memory usage to increase over time.
Fixed an issue causing bowtie2 to crash when processing empty FASTQ records.
Fixed an issue that would cause bowtie2 to erroneously treat -f and -F as mutually exclusive.
Add optional support for libsais to bowtie2-build for faster index building. N.B. -- small indexes are capped at 2GB when using libsais as opposed to 4GB when using the default blockwise algorithm. See MANUAL for more details.

Source: README.md, updated 2024-01-17

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