bioweb Files

Sample application using PostgreSQL, Python ( django ), C++ (boost) + Java Script(AngularJS)

SETTING DEVELOPMENT ENVIRONMENT FOR UBUNTU
-------------------------------------------------- -----------

1) sudo apt-get install postgresql g++ python-dev python-pip scons lighttpd nodejs nodejs-legacy npm git mercurial libpq-dev
2) create database

$ sudo -u postgres createuser --no-superuser --createdb --no-createrole mydb
$ sudo -u postgres createdb -O mydb mydb
$ sudo -u postgres psql -c "alter user mydb with encrypted password 'mydb';"

test connection to the database: psql mydb -U mydb
If failed with error: "psql: FATAL:  Peer authentication failed for user "mydb"" you should e.g. edit /etc/postgresql/9.1/main/pg_hba.conf and
in line "local all all peer" change 'peer' to 'md5'. Restert server #/etc/init.d/postgresql restart (or sudo service postgresql restart)

3) install python packages
sudo pip install -r pip_dev.requirements

4) install bower

sudo npm install -g bower

5) download and unzip www.boost.org, then 'bootstrap.sh', then './b2'
6) copy the subdirectory 'boost' to '/usr/local/include', copy all the files from the 'stage/lib' to '/usr/local/lib' and put the line 'export LD_LIBRARY_PATH=/usr/local/lib' into /etc/bash.profile

7) install 'mt4cpp' library http://mt4cpp.sourcefore.net,  version at least 0.03:
 'sudo dpkg -i mt4cpp_0.3.71-1_amd64.deb' (for 64 bit) or 'sudo dpkg -i mt4cpp_0.3.71-1_i386.deb' or unzip mt4cpp source into '/usr/local/include'

8) install javascript packages

cd client
bower install


SETTING DEVELOPMENT ENVIRONMENT FOR DEBIAN
-------------------------------------------------- -----------

1a) sudo apt-get install postgresql g++ python-dev python-pip scons lighttpd git
1b) You need also packages: nodejs nodejs-legacy npm
	There are not included in current main repository, so you need add testing repository:
	Edit /etc/apt/sources.list and add repository:
		deb http://ftp.de.debian.org/debian sid main to /etc/apt/sources.list
	Update database
		sudo apt-get update
	And install them
		sudo apt-get install nodejs nodejs-legacy npm
	Of course it is possible to download them manually too.
	Remember to remove testing repository after installation!

	The rest (points 2 - 8) is the same as for ubuntu.


SETTING DEVELOPMENT ENVIRONMENT FOR WINDOWS (XP, 7)
-------------------------------------------------- -----------

1) install PostgreSQL
2) install the Microsoft Visual Studio
3) install Python 2.7 (NOT 3.X): https://www.python.org/download/releases/ (for example, in the default path C:\Python27\)
4) add the path where you installed Python to Path, restart console
5) open new terminal and run: python --version (should be 2.7), if command failed, add C:\Python27\;C:\Python27\Scripts to the PATH, restart console
6) install pip: download get-pip.py, e.g.  https://raw.github.com/pypa/pip/master/contrib/get-pip.py, then run 'python get-pip.py'
7) pip install --egg scons
8) pip install -r pip_dev_win.requirements
9) install psycopg: http://www.stickpeople.com/projects/python/win-psycopg/
10) download and unzip http://www.boost.org, then run in a terminal window of Visual Studio the 'bootstrap', then 'bjam.exe --build-type = complete' .
11) 'bjam.exe --build-type=complete install' (it copies headers and libraries to C:/boost)
12) instal mt4cpp (http://mt4cpp.sourcefore.net), version at least 0.03: run mt4cpp_VERSION.exe installer or unzip mt4cpp source into 'C:/usr/local/include'
13) install lighttpd (.exe from: http://en.wlmp-project.net/downloads.php, homepage: www.lighttpd.net)
14)	 add 'C:\Program Files\LightTPD' (or C:\Program Files (x86)\LightTPD) to PATH, restart console
15) install node.js, http://nodejs.org/download/
16) install bower, npm install -g bower
17) install git: http://msysgit.github.io/  During install on first tab select "use git from the windows command...",
    on the second tab "Check-out as is commit unix style"
18) create database, user, password, e.g. mydb, mydb, mydb
19) add directory containing chrome.exe to Path (C:\Program Files\Google\Chrome\Application for version 34.0.1847.131 m)
20) install javascript packages

cd client
bower install

SETTING DEVELOPMENT ENVIRONMENT FOR WINDOWS 7 64 bit
-------------------------------------------------- -----------
1) install PostgreSQL
2) install the Microsoft Visual Studio 2013
3) install Python 2.7 (NOT 3.X): https://www.python.org/download/releases/ (for example, in the default path C:\Python27\) in 64 bit
4) add the path where you installed Python to Path, restart console
5) open new terminal and run: python --version (should be 2.7 64 bit), if command failed, add C:\Python27\;C:\Python27\Scripts to the PATH, restart console
6) install pip: download get-pip.py, e.g.  https://raw.github.com/pypa/pip/master/contrib/get-pip.py, then run 'python get-pip.py'
7) download scons.zip in version at least 2.3.3 (support for msvc12) http://www.scons.org, unzip then install: python setup.py install
8) pip install -r pip_dev_win.requirements
9) install psycopg: http://www.stickpeople.com/projects/python/win-psycopg/
10) download and unzip http://www.boost.org, then run in a 64 bit terminal window of Visual Studio the commands 'bootstrap.bat', then
bjam.exe --address-model=64 link=static link=shared variant=release variant=debug threading=multi stage
11) install boost in C:\Boost
bjam.exe --address-model=64 link=static link=shared variant=release variant=debug threading=multi install
12) instal mt4cpp (http://mt4cpp.sourcefore.net), version at least 0.03: run mt4cpp_VERSION.exe installer or unzip mt4cpp source into 'C:/usr/local/include'
13) install lighttpd (.exe from: http://en.wlmp-project.net/downloads.php, homepage: www.lighttpd.net)
14)	 add 'C:\Program Files\LightTPD' (or C:\Program Files (x86)\LightTPD) to PATH, restart console
15) install node.js, http://nodejs.org/download/
16) install bower, npm install -g bower
17) install git: http://msysgit.github.io/  During install on first tab select "use git from the windows command...",
    on the second tab "Check-out as is commit unix style"
18) create database, user, password, e.g. mydb, mydb, mydb
19) add directory containing chrome.exe to Path (C:\Program Files\Google\Chrome\Application for version 34.0.1847.131 m)
20) install javascript packages

FIRST COMPILATION
-----------------

1) create database schema

scons
scons syncdb=1


COMPILATION
----------
compilation under Linux:

scons

compilation under Windows (compilation should be run in a terminal window Visual Studio):

scons

OTHER COMMANDS (run application in localhost, execute unit tests, check test coverage):
---------------
scons -h