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BioNLP UIMA Component Repository

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The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.

BioNLP UIMA Component Repository Web Site


  • Gene Identification: AbGene, Abner, LingPipe, KeX, NCBO Annotation Service
  • Mutation Identification: MutationFinder
  • Semantic Parsing: OpenDMAP
  • Sentence Detection: KeX, LingPipe, OpenNLP
  • Tokenization: Genia Tagger, LingPipe, Penn BioTokenizer


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Additional Project Details

Intended Audience

Advanced End Users, Developers, Healthcare Industry, Science/Research

User Interface

Other toolkit

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