Biomni Files

Release 0.0.7

What's Changed

• update slack link by @kexinhuang12345 in https://github.com/snap-stanford/Biomni/pull/166
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/snap-stanford/Biomni/pull/162
• Fix wrong import in lab_bench.py (bioagentos → biomni) by @amehrjou in https://github.com/snap-stanford/Biomni/pull/168
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/snap-stanford/Biomni/pull/171
• Update llm.py by @SALhik in https://github.com/snap-stanford/Biomni/pull/169
• Feature: Synapse integration with search and download by @anngvu in https://github.com/snap-stanford/Biomni/pull/173
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/snap-stanford/Biomni/pull/179
• Update a1.py to allow download sepcific datasets from data lake by @HelloWorldLTY in https://github.com/snap-stanford/Biomni/pull/176
• Add Lazyslide Support by @ryanDing26 in https://github.com/snap-stanford/Biomni/pull/156
• fix: enable F401 unused import checks and clean up imports by @Edison-A-N in https://github.com/snap-stanford/Biomni/pull/159
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/snap-stanford/Biomni/pull/199
• 🔨 New Tool: 10 SOTA celltype transfer algorithms by @igor-sadalski in https://github.com/snap-stanford/Biomni/pull/201
• Fix required parameter parsing for auto-discovered MCP tools by @Edison-A-N in https://github.com/snap-stanford/Biomni/pull/181
• feat: Add commercial mode configuration for license compliance by @lxasqjc in https://github.com/snap-stanford/Biomni/pull/200
• quick prompt fix by @serena2z in https://github.com/snap-stanford/Biomni/pull/209
• add new literature search function by @serena2z in https://github.com/snap-stanford/Biomni/pull/211
• 🔨 New Tool: Convert gene names between species by @igor-sadalski in https://github.com/snap-stanford/Biomni/pull/204
• 🔨 New Tool: Generate ESM embeddings from human ensembl id gene names by @igor-sadalski in https://github.com/snap-stanford/Biomni/pull/205
• Adds glycoengineering tools by @shantanusharma in https://github.com/snap-stanford/Biomni/pull/212
• Update fixed_env.yml to fix the errors of google searching not work by @HelloWorldLTY in https://github.com/snap-stanford/Biomni/pull/216
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/snap-stanford/Biomni/pull/208
• fix openfda query by @serena2z in https://github.com/snap-stanford/Biomni/pull/222
• Add pre-processing, segmentation, and registration under bioimaging tools by @MintaYLu in https://github.com/snap-stanford/Biomni/pull/207
• 🧰 New Function: Download conversation with your agent as PDF! by @igor-sadalski in https://github.com/snap-stanford/Biomni/pull/217
• patched font for unavailable characters by @serena2z in https://github.com/snap-stanford/Biomni/pull/223
• release 0.0.7 by @serena2z in https://github.com/snap-stanford/Biomni/pull/230

New Contributors

• @SALhik made their first contribution in https://github.com/snap-stanford/Biomni/pull/169
• @anngvu made their first contribution in https://github.com/snap-stanford/Biomni/pull/173
• @ryanDing26 made their first contribution in https://github.com/snap-stanford/Biomni/pull/156
• @igor-sadalski made their first contribution in https://github.com/snap-stanford/Biomni/pull/201
• @shantanusharma made their first contribution in https://github.com/snap-stanford/Biomni/pull/212

Full Changelog: https://github.com/snap-stanford/Biomni/compare/v0.0.6...v0.0.7