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○ Autoqc was developed to support platform-specific and automated quality control for beginners in metagenomics.
○ Autoqc supports simple and platform-specific quality control to efficiently decrease sequencing errors. For example, PacBio platform often produces long homopolymers, and Autoqc identifies lengths of homopolymers to remove erroneous reads for PacBio platform.
○ Autoqc supports automated quality control to maintain at least 60% of raw reads. For example, certain environmental samples may contain inhibitors, and bacterial DNA from them may not be totally pure. Autoqc automatically adjust thresholds for quality control.
○ Autoqc was developed to be implemented in CLOSHA system (https://closha.kobic.re.kr/).
Features
- Quality control
- Metagenomics
- Platfrom-specific
- Automated quality control
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