AmberAnalysis Files

The AmberAnalysis package provides command-line tools for profiling density,
orientation, and hydrogen bonding in the output files from AMBER Molecular
Dynamics simulations (http://www.ambermd.org/).

You may also want to consider mdtraj, a python package which uses numpy
(based on C) to load and manipulate molecular dynamics trajectories.
http://rmcgibbo.github.io/mdtraj/

To install these programs, you will need two third-party libraries, which are
availble for free: NetCDF and MatPlotLib. Instructions for installing these
libraries and building AmberAnalysis are in the Makefile itself.

This package is designed to be compiled on UNIX-like systems (e.g., Mac,
Linux, Cygwin). It uses the fork() system call for parallel processing.

The developer of this package was a student at Pacific University, Oregon.