ADOMA

ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines.

For more information check the README.md in the Files section.

How to cite ADOMA:

Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083

http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

Project Samples

Default ClustalW output in HTML format with DNA sequences from the IPD KIR database

Simplified ClustalW output in HTML format with DNA sequences from the IPD KIR database

Colored ClustalW output in HTML format with protein sequences from the IPD KIR database

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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ADOMA Web Site

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Additional Project Details

Operating Systems

Linux

User Interface

Command-line

Programming Language

Python, Unix Shell

Related Categories

Unix Shell Bio-Informatics Software, Unix Shell Data Visualization Software, Unix Shell Command Line Tools, Python Bio-Informatics Software, Python Data Visualization Software, Python Command Line Tools

Registered

2014-11-25

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