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spaan_64_bit.tar.gz (8.3 MB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| README.txt | 2013-06-25 | 960 Bytes | |
| spaan_64_bit.tar.gz | 2013-05-28 | 8.3 MB | |
| spaan_32_bit.tar.gz | 2013-05-28 | 10.5 MB | |
| Totals: 3 Items | 18.8 MB | 3 | |
System Requirement: Red Hat Linux version 7.3 or above. Other requirements: C compiler Instruction for usage 1. SPAAN is provided as a tar-gzipped file. Post download, it should be unzipped and untarred by the command 'tar xvzf SPAAN.tar.gz'. 2. The query sequences should be in FASTA format. Multiple sequences can be present in the input file. 3. The input file should be named as 'query.dat'. 4. The command to run the software SPAAN is './askquery'. 5. The output data is stored in 'query.out'. 6. If the existing binary files are not compatible to the system, the source C codes provided need to recompiled using the following example command- gcc lm standard.c o standard.o List of C source codes to be compiled standard.c, filter.c, annotate.c and finalp1.c in the main SPAAN directory; recognize.c, AAcompo.c, hdr.c, multiplets.c, querydipep.c and charge.c in their respective directories: AAcompo, hdr, multiplets, dipep and charge.