yTOS

Metabolic pathways to Systems Biology standards (SBGN and SBML)

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Last Update: 2015-08-19

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yTOS enables transformation of metabolic pathways generated in yEd graph editor into a computational model defined by Systems Biology standards: SBGN (Systems Biology Graphical Notation) format and SBML (Systems Biology Markup Language) with CellDesigner annotations.

yTOS takes as input a graphML file.

The example of Glycolysis given with yTOS tool was adopted from http://www.sbgn.org/Documents/PD_L1_Examples .

Requirements: Java 1.8 is necessary.

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