Activity for rxncon
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Sebastian committed [2b77cb]
underconstruction
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Basti committed [9d2797]
removed Postdoc announcement
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Basti committed [18781c]
removed Postdoc announcement
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Basti committed [58b299]
boolean simulation works again. added some comm...
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Basti committed [45403e]
Mit probabilistic_boolean zusammenführen
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fugufisch committed [a846f5]
fixed statespace bug
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uses booleannet syntax for simulation, changed ...
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Basti committed [a5870b]
had some issues with newest web2py version. we ...
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Basti committed [ea67c0]
some change...
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Basti committed [708f2c]
had some issues with newest web2py version. we ...
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Basti committed [ff1443]
Mit probabilistic_boolean zusammenführen
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Basti committed [97198b]
Mit default zusammenführen
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Basti committed [da2d8d]
position text changes
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Max Floettmann committed [a9bd0f]
latest changes from tomoya
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Basti committed [12379e]
changed PostDoc position announcement and delet...
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Basti committed [fc7ba1]
some changes
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Max Floettmann committed [c9c169]
adds tomoyas changes
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Max Floettmann committed [63954a]
style corrections (not nearly enough) in boolea...
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max@MacBook-7.local committed [5ecfa4]
code reformatting
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max@MacBook-7.local committed [3ab708]
more code readability in boolean.py
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Sebastian committed [6d8d76]
changed import in controllers/default.py from r...
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Marcus@Marcus-HP.biologie.hu-berlin.de committed [572b49]
added missing contact info
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Marcus@Marcus-HP.localdomain committed [d73220]
Added announcement pdf
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Marcus@Marcus-HP.biologie.hu-berlin.de committed [2548ec]
Minor update of homepage
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started with refactoring Tree and Node class is...
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fixed some problems with resetting the parent o...
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merged with biology
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new RxnCompiler version 1.0.0 added
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merged with biology
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changed the bng.xls_tables access from previous...
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fixed some bugs. 1) quick rxncon_parser expects...
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celldesigner layout id, metaID, species, name c...
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celldesigner layout listOfIncludedSpecies, list...
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Galena Alyson Canada committed [56de76]
Added tag rxnconCompiler-1.0.0 for changeset 22...
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Closed branch default-development
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Closed branch refactoring
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rxnconCompiler releasing script updates. Releas...
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start of celldesigner layout
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mapk works in BioNetGen. Wornings added for con...
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covalent reactions are felxible now. outstandin...
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solved bug in get_product_contingency() get_sou...
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Bug in applying complexes fixed - the same comp...
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flexible_reactions merge to biology
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finding bug in runing bionetgen in progress.
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comments added.
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Tests for flexible reactions added.
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new branch for adding flexible reactions in rxncon
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missing reactions are added now if run_process(...
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Warnings in bngl moved to RxnconWarnings. Tests...
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double domains removed from species
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Work on molecules and species section in progre...
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Test data added.
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Asoc exchanged with Assoc
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new tree labels. only if a protein or complex i...
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changed self.translator.get_complex_str() in ge...
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work in progress on domain names
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domain fixed exchanged old bd in get_dsr with N...
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unused files removed
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rxnconCompiler release 0.2.6
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rxnconCompiler pluged to defoult rxncon/rulebas...
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code in rulbased.py exchange with conection to ...
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default_biology branch for integration biology ...
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Added tag release 0.2.5 of rxnconCompiler for c...
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interface and test for rxnconCompiler added to ...
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new examples added bngl translation; parrent ge...
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updated Rxncompiler version from 0.2.4 to 0.2.5
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requirements and test_requirements restored.
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In progress: updating releases of rxnconCompiler.
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Big cleaning, updating tests and documentation.
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get_domain_try changed to get_domain
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All MAPK reactions pass.
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221 reactions works. Problem with the lst react...
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Closed branch with hanging domains naming - the...
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Closed branch experimenting with releases with ...
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Fixed: which domain needs to be taken for homod...
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work in progress. resolving difficoult reactions.
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work in progress
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bug for applying multiple k- fixed. Molecule me...
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Domain name for asocciations changed: Asoc + pa...
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Moving test data for separate directiry. Adding...
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PRODUCE and CONSUME added, basic reaction types...
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ipi works. Domein can be used only onece in one...
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Closed branch PBN (Probabilistic BooleaN)
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there was an issue with updating graphs by chan...
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added sbml export for lumped reactions
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Max Floettmann committed [51b2ec]
changes the address for web2py download to our ...
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190 rules work.
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Added tag web-release_pbn for changeset 6f9d6a4...
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first version of AF2ER where the edges between ...
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Basti committed [707bac]
AF2ER applies the AF coordinates to the ER; ER2...
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insert instead of append in ajax fixes graphs (...
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DefaultSaving merged - Basti fixes ER and AF.
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Test from Basti with K+ and ! modification added.
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PBN merged to default.
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restored visualisation of ER AF and PD tested i...
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solved saving problem of loaded files, added fi...
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sbml export works; updated rxnconCompiler to ve...
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fixed some issues in biographer now graphs can ...
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added lumped modifications to sbml export. test...
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Max Floettmann committed [cc6741]
adds pbn button and dialog to index
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