Greetings,
Sorry for the delay in getting back to you.
Probably the quickest way for you to get going for now is to access
the GenMAPP Builder source code. The code has a fully functional
UniProt importer component; you can pattern your own code against
that. When you have the code, and specific questions come up, just
post them to this mailing list and we can address them.
GenMAPP Builder is an ant-built Java project, and its source can be
retrieved using Subversion via this URL:
https://xmlpipedb.svn.sourceforge.net/svnroot/xmlpipedb/trunk/gmbuilder
The directory tree is self-contained. It does use our related
XMLPipeDB Utilities and UniProtDB/GODB subprojects, but they are
included as binaries in the above code base instead of having to be
compiled from source.
Hope this helps!
John David N. Dionisio, PhD
Assistant Professor, Computer Science
Loyola Marymount University
On Oct 26, 2009, at 8:05 PM, wang peter wrote:
> dear sir or madam:
> i am from a bioinformaitcs group, nankai university,china.
> thank you for your XMLPipeDB utilities files.
> it is a very useful tool for us.
> i have used xsd2db tools to translate xsd document and
> construct the structure of UNIPROT database including
> 61 tables. the next step, i want to transfer data from xml document
> to relational database of UNIPROT on our local computers.i have read
> the manual carefully. it is too simple about how to use those
> classes in xpdutils-2.1.zip. the key problem is
> the sample has no attached source codes.
> can you give me some information about how to use those
> classess to develop our project, or give us
> some source codes to construct UNIPROT locally.
>
> i will write acknowledgement to you on any papers which used your
> tools thank u very much
> best regard
> gao shan
>
>
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