xmlpipedb-developer Mailing List for XMLPipeDB (Page 16)

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GenMAPP Builder 2.0 Beta 57 has been released. This release of GenMAPP 
Builder fixes a regular expression syntax error encountered with the previous 
Windows 7 fix attempt.

Hi,

Still an error...

See attached.

Dr. D

At 03:57 PM 9/22/2010, you wrote:
>GenMAPP Builder 2.0 Beta 56 has been released. This release of 
>GenMAPP Builder attempts another potential fix to allow Access 
>database connection in Windows 7.
>
>
>
>

GenMAPP Builder 2.0 Beta 56 has been released. This release of GenMAPP 
Builder attempts another potential fix to allow Access database connection in 
Windows 7.

Hi,

Still an error, see attached.

Dr. D

At 11:33 AM 9/22/2010, Don Murphy wrote:
>GenMAPP Builder 2.0 Beta 55 has been released. This release of 
>GenMAPP Builder attempts another potential fix to allow Access 
>database connection in Windows 7.
>
>
>

GenMAPP Builder 2.0 Beta 55 has been released. This release of GenMAPP 
Builder attempts another potential fix to allow Access database connection in 
Windows 7.

This release will require more testing on a Windows 7 box to see if the database 
connection fix worked. I'll be working on getting a SourceForge Wiki page up to 
chronicle this issue and its fix attempts.
 Don Murphy

________________________________
From: Don Murphy <djs...@ya...>
To: xml...@li...
Sent: Tue, September 21, 2010 2:21:26 PM
Subject: [XMLPipeDB-developer] GenMAPP Builder 2.0 Beta 54 Released

GenMAPP Builder 2.0 Beta 54 has been released. This release of GenMAPP 
Builder attempts another potential fix to allow Access database connection in 
Windows 7.

The newest version of gmbuilder, 2.0b53, should have a new note included when 
getting a connection to the database. Although it will encounter the same error, 
the command line feedback should be slightly different. Another test on a 
Windows 7 box and screenshot of the error would be greatly appreciated.
 Don Murphy

________________________________
From: Kam Dahlquist <kda...@lm...>
To: "xml...@li..." 
<xml...@li...>
Sent: Thu, September 16, 2010 4:44:45 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Hi,

Sorry--it's still giving an error, I think it is the same, see attached 
screenshot.

Best,
Dr. D

At 04:36 PM 9/16/2010, Don Murphy wrote:

I think Dondi and I found the problem. A new release, gmbuilder-2.0b52, has been 
uploaded; please test it out on Windows 7.
>
>Don Murphy
>
>
>
>From: Kam Dahlquist <kda...@lm...>
>To: "xml...@li..." 
><xml...@li...>
>Sent: Thu, September 16, 2010 3:24:55 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Hi,
>
>Screenshot attached.
>
>Dr. D
>
>At 03:07 PM 9/16/2010, Don Murphy wrote:
>
>I heard from Dondi it was 64-bit. That may be part of the issue. Do we have any 
>32-bit Windows 7 machines to test on?
>>
>>To further understand what ODBC DSNs you have on the Windows 7 machine, would 
>>you mind looking at the ODBC Administrator and its User DSN tab? The 
>>administrator should be here on the computer: c:\windows\sysWOW64\odbcad32.exe
>>
>>If you can find it, open it and take a screenshot with User DSN tab selected.
>>
>>Don Murphy
>>
>>
>>
>>From: Don Murphy <djs...@ya...>
>>To: xml...@li...
>>Sent: Thu, September 16, 2010 12:58:34 PM
>>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>>
>>For further reference, which version of Windows 7 is being used: 32-bit or 
>>64-bit?
>> 
>>Don Murphy
>>
>>
>>
>>From: Don Murphy <djs...@ya...>
>>To: xml...@li...
>>Sent: Wed, September 15, 2010 6:33:29 PM
>>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>>
>>Dang. Oh well, I'll keep looking for more leads on potential fixes.
>> 
>>Don Murphy
>>
>>
>>
>>From: Kam Dahlquist <kda...@lm...>
>>To: "xml...@li..." 
>><xml...@li...>
>>Sent: Wed, September 15, 2010 5:41:49 PM
>>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>>
>>Hi,
>>
>>I went ahead and installed the package (for 32-bit, it wouldn't let me install 
>>the 64-bit version because I only have 32-bit Office installed).  The 
>>installation completed OK.
>>
>>However, when I went to export a gdb, I got the exact same error as before, so 
>>this did not fix the problem, unfortunately.
>>
>>Best,
>>Kam
>>
>>At 05:14 PM 9/15/2010, Don Murphy wrote:
>>
>>- I'm not sure, but judging by the numerous similar complaints I've found, that 
>>might be the case, especially if this fixes it.
>>>
>>>- It should use the same Odbc-Jdbc bridge name as we thought it would use and is 
>>>currently used in gmbuilder for Windows 7.
>>>
>>>- As I haven't used the redistributable myself, I don't have an immediate answer 
>>>for driver distribution through our release. I'll look into it further.
>>>
>>>Dr. Dahlquist, would you mind also telling us about installing the distributable 
>>>when reporting the results of the test? With any luck, it may be a very simple 
>>>installation that won't be too much of an inconvenience. Sorry again that I 
>>>can't test this myself.
>>>
>>>Don Murphy
>>>
>>>
>>>
>>>From: John David N. Dionisio <do...@lm...>
>>>To: xml...@li...
>>>Sent: Wed, September 15, 2010 4:46:06 PM
>>>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>>>
>>>Greetings all,
>>>
>>>I have some follow-up questions on this:
>>>
>>>- Does this mean that Microsoft no longer includes the Jet database library (or 
>>>whatever they call it now) as a default part of Windows 7?
>>>
>>>- Under what Odbc-Jdbc bridge name would we be able to find this redistributable 
>>>version of the driver?
>>>
>>>- I agree with Kam that, if this turns out to be the only way to go, it would be 
>>>a serious inconvenience for our potential users.  Might we be able to include 
>>>the .dll as part of our own distribution?  (with proper acknowledgments, of 
>>>course)
>>>
>>>Don, please continue to investigate other possible solutions while Dr. Dahlquist 
>>>gives the current one a shot.  Thanks!
>>>
>>>John David N. Dionisio, PhD
>>>Associate Professor, Computer Science
>>>Loyola Marymount University
>>>
>>>
>>>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist <kda...@lm...> wrote:
>>>
>>>
>>>Hi,
>>>>
>>>>I'll give this a try tonight and see what happens.  This would be disappointing, 
>>>>though since anyone who wants to use our program on Windows 7 will need this 
>>>>patch.
>>>>
>>>>Best,
>>>>Dr. D
>>>>
>>>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>>>
>>>>I've started searching for information on what could solve the issues GMBuilder 
>>>>has been having when loading through Windows 7. I'm not sure if this may deal 
>>>>with our issue, but running the Microsoft Access Database Engine 2010 
>>>>Redistributable (which can be found here: 
>>>>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D
>>>> ) on the Windows 7 machine before attempting another export might solve the 
>>>>problem.
>>>>>
>>>>>Hope this helps.
>>>>> 
>>>>>Don Murphy
>
>
>

GenMAPP Builder 2.0 Beta 53 has been released.  This release of GenMAPP Builder implements some Tally Engine customizations for M. tuberculosis, including removal of ORF tallies and filtering of database tallies to IDs beginning with Rv only.  The XML tally function does not currently support selective text filtering, so is currently not included yet.  Thus, the XML tally function still reports all "ordered locus" IDs for M. tuberculosis, and not just those beginning with Rv.

(the Tally Engine can be extended to do selective text filtering for XML files, but this requires changes in the XMLPipeDB Utilities library and not just GenMAPP Builder; I decided to release the database fix for now while the deeper Tally Engine change is still in progress)

I think Dondi and I found the problem. A new release, gmbuilder-2.0b52, has been 
uploaded; please test it out on Windows 7.
Don Murphy

________________________________
From: Kam Dahlquist <kda...@lm...>
To: "xml...@li..." 
<xml...@li...>
Sent: Thu, September 16, 2010 3:24:55 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Hi,

Screenshot attached.

Dr. D

At 03:07 PM 9/16/2010, Don Murphy wrote:

I heard from Dondi it was 64-bit. That may be part of the issue. Do we have any 
32-bit Windows 7 machines to test on?
>
>To further understand what ODBC DSNs you have on the Windows 7 machine, would 
>you mind looking at the ODBC Administrator and its User DSN tab? The 
>administrator should be here on the computer: c:\windows\sysWOW64\odbcad32.exe
>
>If you can find it, open it and take a screenshot with User DSN tab selected.
>
>Don Murphy
>
>
>
>From: Don Murphy <djs...@ya...>
>To: xml...@li...
>Sent: Thu, September 16, 2010 12:58:34 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>For further reference, which version of Windows 7 is being used: 32-bit or 
>64-bit?
> 
>Don Murphy
>
>
>
>From: Don Murphy <djs...@ya...>
>To: xml...@li...
>Sent: Wed, September 15, 2010 6:33:29 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Dang. Oh well, I'll keep looking for more leads on potential fixes.
> 
>Don Murphy
>
>
>
>From: Kam Dahlquist <kda...@lm...>
>To: "xml...@li..." 
><xml...@li...>
>Sent: Wed, September 15, 2010 5:41:49 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Hi,
>
>I went ahead and installed the package (for 32-bit, it wouldn't let me install 
>the 64-bit version because I only have 32-bit Office installed).  The 
>installation completed OK.
>
>However, when I went to export a gdb, I got the exact same error as before, so 
>this did not fix the problem, unfortunately.
>
>Best,
>Kam
>
>At 05:14 PM 9/15/2010, Don Murphy wrote:
>
>- I'm not sure, but judging by the numerous similar complaints I've found, that 
>might be the case, especially if this fixes it.
>>
>>- It should use the same Odbc-Jdbc bridge name as we thought it would use and is 
>>currently used in gmbuilder for Windows 7.
>>
>>- As I haven't used the redistributable myself, I don't have an immediate answer 
>>for driver distribution through our release. I'll look into it further.
>>
>>Dr. Dahlquist, would you mind also telling us about installing the distributable 
>>when reporting the results of the test? With any luck, it may be a very simple 
>>installation that won't be too much of an inconvenience. Sorry again that I 
>>can't test this myself.
>>
>>Don Murphy
>>
>>
>>
>>From: John David N. Dionisio <do...@lm...>
>>To: xml...@li...
>>Sent: Wed, September 15, 2010 4:46:06 PM
>>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>>
>>Greetings all,
>>
>>I have some follow-up questions on this:
>>
>>- Does this mean that Microsoft no longer includes the Jet database library (or 
>>whatever they call it now) as a default part of Windows 7?
>>
>>- Under what Odbc-Jdbc bridge name would we be able to find this redistributable 
>>version of the driver?
>>
>>- I agree with Kam that, if this turns out to be the only way to go, it would be 
>>a serious inconvenience for our potential users.  Might we be able to include 
>>the .dll as part of our own distribution?  (with proper acknowledgments, of 
>>course)
>>
>>Don, please continue to investigate other possible solutions while Dr. Dahlquist 
>>gives the current one a shot.  Thanks!
>>
>>John David N. Dionisio, PhD
>>Associate Professor, Computer Science
>>Loyola Marymount University
>>
>>
>>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist <kda...@lm...> wrote:
>>
>>
>>Hi,
>>>
>>>I'll give this a try tonight and see what happens.  This would be disappointing, 
>>>though since anyone who wants to use our program on Windows 7 will need this 
>>>patch.
>>>
>>>Best,
>>>Dr. D
>>>
>>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>>
>>>I've started searching for information on what could solve the issues GMBuilder 
>>>has been having when loading through Windows 7. I'm not sure if this may deal 
>>>with our issue, but running the Microsoft Access Database Engine 2010 
>>>Redistributable (which can be found here: 
>>>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D
>>> ) on the Windows 7 machine before attempting another export might solve the 
>>>problem.
>>>>
>>>>Hope this helps.
>>>> 
>>>>Don Murphy
>

I heard from Dondi it was 64-bit. That may be part of the issue. Do we have any 
32-bit Windows 7 machines to test on?

To further understand what ODBC DSNs you have on the Windows 7 machine, would 
you mind looking at the ODBC Administrator and its User DSN tab? The 
administrator should be here on the computer: c:\windows\sysWOW64\odbcad32.exe

If you can find it, open it and take a screenshot with User DSN tab selected.
Don Murphy

________________________________
From: Don Murphy <djs...@ya...>
To: xml...@li...
Sent: Thu, September 16, 2010 12:58:34 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

For further reference, which version of Windows 7 is being used: 32-bit or 
64-bit?
 Don Murphy

________________________________
From: Don Murphy <djs...@ya...>
To: xml...@li...
Sent: Wed, September 15, 2010 6:33:29 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Dang. Oh well, I'll keep looking for more leads on potential fixes.
 Don Murphy

________________________________
From: Kam Dahlquist <kda...@lm...>
To: "xml...@li..." 
<xml...@li...>
Sent: Wed, September 15, 2010 5:41:49 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Hi,

I went ahead and installed the package (for 32-bit, it wouldn't let me install 
the 64-bit version because I only have 32-bit Office installed).  The 
installation completed OK.

However, when I went to export a gdb, I got the exact same error as before, so 
this did not fix the problem, unfortunately.

Best,
Kam

At 05:14 PM 9/15/2010, Don Murphy wrote:

- I'm not sure, but judging by the numerous similar complaints I've found, that 
might be the case, especially if this fixes it.
>
>- It should use the same Odbc-Jdbc bridge name as we thought it would use and is 
>currently used in gmbuilder for Windows 7.
>
>- As I haven't used the redistributable myself, I don't have an immediate answer 
>for driver distribution through our release. I'll look into it further.
>
>Dr. Dahlquist, would you mind also telling us about installing the distributable 
>when reporting the results of the test? With any luck, it may be a very simple 
>installation that won't be too much of an inconvenience. Sorry again that I 
>can't test this myself.
>
>Don Murphy
>
>
>
>From: John David N. Dionisio <do...@lm...>
>To: xml...@li...
>Sent: Wed, September 15, 2010 4:46:06 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Greetings all,
>
>I have some follow-up questions on this:
>
>- Does this mean that Microsoft no longer includes the Jet database library (or 
>whatever they call it now) as a default part of Windows 7?
>
>- Under what Odbc-Jdbc bridge name would we be able to find this redistributable 
>version of the driver?
>
>- I agree with Kam that, if this turns out to be the only way to go, it would be 
>a serious inconvenience for our potential users.  Might we be able to include 
>the .dll as part of our own distribution?  (with proper acknowledgments, of 
>course)
>
>Don, please continue to investigate other possible solutions while Dr. Dahlquist 
>gives the current one a shot.  Thanks!
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Loyola Marymount University
>
>
>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist <kda...@lm...> wrote:
>
>
>Hi,
>>
>>I'll give this a try tonight and see what happens.  This would be disappointing, 
>>though since anyone who wants to use our program on Windows 7 will need this 
>>patch.
>>
>>Best,
>>Dr. D
>>
>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>
>>I've started searching for information on what could solve the issues GMBuilder 
>>has been having when loading through Windows 7. I'm not sure if this may deal 
>>with our issue, but running the Microsoft Access Database Engine 2010 
>>Redistributable (which can be found here: 
>>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D
>> ) on the Windows 7 machine before attempting another export might solve the 
>>problem.
>>>
>>>Hope this helps.
>>> 
>>>Don Murphy
>>>

Hi,

It's 64-bit.

Dr. D

At 12:58 PM 9/16/2010, you wrote:
>For further reference, which version of Windows 7 is being used: 
>32-bit or 64-bit?
>
>Don Murphy
>
>
>
>From: Don Murphy <djs...@ya...>
>To: xml...@li...
>Sent: Wed, September 15, 2010 6:33:29 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Dang. Oh well, I'll keep looking for more leads on potential fixes.
>
>Don Murphy
>
>
>
>From: Kam Dahlquist <kda...@lm...>
>To: "xml...@li..." 
><xml...@li...>
>Sent: Wed, September 15, 2010 5:41:49 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Hi,
>
>I went ahead and installed the package (for 32-bit, it wouldn't let 
>me install the 64-bit version because I only have 32-bit Office 
>installed).  The installation completed OK.
>
>However, when I went to export a gdb, I got the exact same error as 
>before, so this did not fix the problem, unfortunately.
>
>Best,
>Kam
>
>At 05:14 PM 9/15/2010, Don Murphy wrote:
>>- I'm not sure, but judging by the numerous similar complaints I've 
>>found, that might be the case, especially if this fixes it.
>>
>>- It should use the same Odbc-Jdbc bridge name as we thought it 
>>would use and is currently used in gmbuilder for Windows 7.
>>
>>- As I haven't used the redistributable myself, I don't have an 
>>immediate answer for driver distribution through our release. I'll 
>>look into it further.
>>
>>Dr. Dahlquist, would you mind also telling us about installing the 
>>distributable when reporting the results of the test? With any 
>>luck, it may be a very simple installation that won't be too much 
>>of an inconvenience. Sorry again that I can't test this myself.
>>
>>Don Murphy
>>
>>
>>
>>From: John David N. Dionisio <do...@lm...>
>>To: xml...@li...
>>Sent: Wed, September 15, 2010 4:46:06 PM
>>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>>
>>Greetings all,
>>
>>I have some follow-up questions on this:
>>
>>- Does this mean that Microsoft no longer includes the Jet database 
>>library (or whatever they call it now) as a default part of Windows 7?
>>
>>- Under what Odbc-Jdbc bridge name would we be able to find this 
>>redistributable version of the driver?
>>
>>- I agree with Kam that, if this turns out to be the only way to 
>>go, it would be a serious inconvenience for our potential 
>>users.  Might we be able to include the .dll as part of our own 
>>distribution?  (with proper acknowledgments, of course)
>>
>>Don, please continue to investigate other possible solutions while 
>>Dr. Dahlquist gives the current one a shot.  Thanks!
>>
>>John David N. Dionisio, PhD
>>Associate Professor, Computer Science
>>Loyola Marymount University
>>
>>
>>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist 
>><<mailto:kda...@lm...>kda...@lm...> wrote:
>>
>>>Hi,
>>>
>>>I'll give this a try tonight and see what happens.  This would be 
>>>disappointing, though since anyone who wants to use our program on 
>>>Windows 7 will need this patch.
>>>
>>>Best,
>>>Dr. D
>>>
>>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>>>I've started searching for information on what could solve the 
>>>>issues GMBuilder has been having when loading through Windows 7. 
>>>>I'm not sure if this may deal with our issue, but running the 
>>>>Microsoft Access Database Engine 2010 Redistributable (which can 
>>>>be found here: 
>>>><http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D 
>>>>) on the Windows 7 machine before attempting another export might 
>>>>solve the problem.
>>>>
>>>>Hope this helps.
>>>>
>>>>Don Murphy
>>
>
>
>

For further reference, which version of Windows 7 is being used: 32-bit or 
64-bit?
 Don Murphy

________________________________
From: Don Murphy <djs...@ya...>
To: xml...@li...
Sent: Wed, September 15, 2010 6:33:29 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Dang. Oh well, I'll keep looking for more leads on potential fixes.
 Don Murphy

________________________________
From: Kam Dahlquist <kda...@lm...>
To: "xml...@li..." 
<xml...@li...>
Sent: Wed, September 15, 2010 5:41:49 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Hi,

I went ahead and installed the package (for 32-bit, it wouldn't let me install 
the 64-bit version because I only have 32-bit Office installed).  The 
installation completed OK.

However, when I went to export a gdb, I got the exact same error as before, so 
this did not fix the problem, unfortunately.

Best,
Kam

At 05:14 PM 9/15/2010, Don Murphy wrote:

- I'm not sure, but judging by the numerous similar complaints I've found, that 
might be the case, especially if this fixes it.
>
>- It should use the same Odbc-Jdbc bridge name as we thought it would use and is 
>currently used in gmbuilder for Windows 7.
>
>- As I haven't used the redistributable myself, I don't have an immediate answer 
>for driver distribution through our release. I'll look into it further.
>
>Dr. Dahlquist, would you mind also telling us about installing the distributable 
>when reporting the results of the test? With any luck, it may be a very simple 
>installation that won't be too much of an inconvenience. Sorry again that I 
>can't test this myself.
>
>Don Murphy
>
>
>
>From: John David N. Dionisio <do...@lm...>
>To: xml...@li...
>Sent: Wed, September 15, 2010 4:46:06 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Greetings all,
>
>I have some follow-up questions on this:
>
>- Does this mean that Microsoft no longer includes the Jet database library (or 
>whatever they call it now) as a default part of Windows 7?
>
>- Under what Odbc-Jdbc bridge name would we be able to find this redistributable 
>version of the driver?
>
>- I agree with Kam that, if this turns out to be the only way to go, it would be 
>a serious inconvenience for our potential users.  Might we be able to include 
>the .dll as part of our own distribution?  (with proper acknowledgments, of 
>course)
>
>Don, please continue to investigate other possible solutions while Dr. Dahlquist 
>gives the current one a shot.  Thanks!
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Loyola Marymount University
>
>
>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist <kda...@lm...> wrote:
>
>
>Hi,
>>
>>I'll give this a try tonight and see what happens.  This would be disappointing, 
>>though since anyone who wants to use our program on Windows 7 will need this 
>>patch.
>>
>>Best,
>>Dr. D
>>
>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>
>>I've started searching for information on what could solve the issues GMBuilder 
>>has been having when loading through Windows 7. I'm not sure if this may deal 
>>with our issue, but running the Microsoft Access Database Engine 2010 
>>Redistributable (which can be found here: 
>>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D
>> ) on the Windows 7 machine before attempting another export might solve the 
>>problem.
>>>
>>>Hope this helps.
>>> 
>>>Don Murphy
>>>

Dang. Oh well, I'll keep looking then and will post when I find another potential fix.

Don Murphy

----- Reply message -----
From: "Kam Dahlquist" <kda...@lm...>
Date: Wed, Sep 15, 2010 5:41 pm
Subject: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
To: "xml...@li..." <xml...@li...>

Hi,

I went ahead and installed the package (for 32-bit, it wouldn't let 
me install the 64-bit version because I only have 32-bit Office 
installed).  The installation completed OK.

However, when I went to export a gdb, I got the exact same error as 
before, so this did not fix the problem, unfortunately.

Best,
Kam

At 05:14 PM 9/15/2010, Don Murphy wrote:
>- I'm not sure, but judging by the numerous similar complaints I've 
>found, that might be the case, especially if this fixes it.
>
>- It should use the same Odbc-Jdbc bridge name as we thought it 
>would use and is currently used in gmbuilder for Windows 7.
>
>- As I haven't used the redistributable myself, I don't have an 
>immediate answer for driver distribution through our release. I'll 
>look into it further.
>
>Dr. Dahlquist, would you mind also telling us about installing the 
>distributable when reporting the results of the test? With any luck, 
>it may be a very simple installation that won't be too much of an 
>inconvenience. Sorry again that I can't test this myself.
>
>Don Murphy
>
>
>
>From: John David N. Dionisio <do...@lm...>
>To: xml...@li...
>Sent: Wed, September 15, 2010 4:46:06 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Greetings all,
>
>I have some follow-up questions on this:
>
>- Does this mean that Microsoft no longer includes the Jet database 
>library (or whatever they call it now) as a default part of Windows 7?
>
>- Under what Odbc-Jdbc bridge name would we be able to find this 
>redistributable version of the driver?
>
>- I agree with Kam that, if this turns out to be the only way to go, 
>it would be a serious inconvenience for our potential users.  Might 
>we be able to include the .dll as part of our own 
>distribution?  (with proper acknowledgments, of course)
>
>Don, please continue to investigate other possible solutions while 
>Dr. Dahlquist gives the current one a shot.  Thanks!
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Loyola Marymount University
>
>
>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist 
><<mailto:kda...@lm...>kda...@lm...> wrote:
>
>>Hi,
>>
>>I'll give this a try tonight and see what happens.  This would be 
>>disappointing, though since anyone who wants to use our program on 
>>Windows 7 will need this patch.
>>
>>Best,
>>Dr. D
>>
>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>>I've started searching for information on what could solve the 
>>>issues GMBuilder has been having when loading through Windows 7. 
>>>I'm not sure if this may deal with our issue, but running the 
>>>Microsoft Access Database Engine 2010 Redistributable (which can 
>>>be found here: 
>>><http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D 
>>>) on the Windows 7 machine before attempting another export might 
>>>solve the problem.
>>>
>>>Hope this helps.
>>>
>>>Don Murphy
>
>

Dang. Oh well, I'll keep looking for more leads on potential fixes.
 Don Murphy

________________________________
From: Kam Dahlquist <kda...@lm...>
To: "xml...@li..." 
<xml...@li...>
Sent: Wed, September 15, 2010 5:41:49 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Hi,

I went ahead and installed the package (for 32-bit, it wouldn't let me install 
the 64-bit version because I only have 32-bit Office installed).  The 
installation completed OK.

However, when I went to export a gdb, I got the exact same error as before, so 
this did not fix the problem, unfortunately.

Best,
Kam

At 05:14 PM 9/15/2010, Don Murphy wrote:

- I'm not sure, but judging by the numerous similar complaints I've found, that 
might be the case, especially if this fixes it.
>
>- It should use the same Odbc-Jdbc bridge name as we thought it would use and is 
>currently used in gmbuilder for Windows 7.
>
>- As I haven't used the redistributable myself, I don't have an immediate answer 
>for driver distribution through our release. I'll look into it further.
>
>Dr. Dahlquist, would you mind also telling us about installing the distributable 
>when reporting the results of the test? With any luck, it may be a very simple 
>installation that won't be too much of an inconvenience. Sorry again that I 
>can't test this myself.
>
>Don Murphy
>
>
>
>From: John David N. Dionisio <do...@lm...>
>To: xml...@li...
>Sent: Wed, September 15, 2010 4:46:06 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Greetings all,
>
>I have some follow-up questions on this:
>
>- Does this mean that Microsoft no longer includes the Jet database library (or 
>whatever they call it now) as a default part of Windows 7?
>
>- Under what Odbc-Jdbc bridge name would we be able to find this redistributable 
>version of the driver?
>
>- I agree with Kam that, if this turns out to be the only way to go, it would be 
>a serious inconvenience for our potential users.  Might we be able to include 
>the .dll as part of our own distribution?  (with proper acknowledgments, of 
>course)
>
>Don, please continue to investigate other possible solutions while Dr. Dahlquist 
>gives the current one a shot.  Thanks!
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Loyola Marymount University
>
>
>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist <kda...@lm...> wrote:
>
>
>Hi,
>>
>>I'll give this a try tonight and see what happens.  This would be disappointing, 
>>though since anyone who wants to use our program on Windows 7 will need this 
>>patch.
>>
>>Best,
>>Dr. D
>>
>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>
>>I've started searching for information on what could solve the issues GMBuilder 
>>has been having when loading through Windows 7. I'm not sure if this may deal 
>>with our issue, but running the Microsoft Access Database Engine 2010 
>>Redistributable (which can be found here: 
>>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D
>> ) on the Windows 7 machine before attempting another export might solve the 
>>problem.
>>>
>>>Hope this helps.
>>> 
>>>Don Murphy
>>>

Hi,

I went ahead and installed the package (for 32-bit, it wouldn't let 
me install the 64-bit version because I only have 32-bit Office 
installed).  The installation completed OK.

However, when I went to export a gdb, I got the exact same error as 
before, so this did not fix the problem, unfortunately.

Best,
Kam

At 05:14 PM 9/15/2010, Don Murphy wrote:
>- I'm not sure, but judging by the numerous similar complaints I've 
>found, that might be the case, especially if this fixes it.
>
>- It should use the same Odbc-Jdbc bridge name as we thought it 
>would use and is currently used in gmbuilder for Windows 7.
>
>- As I haven't used the redistributable myself, I don't have an 
>immediate answer for driver distribution through our release. I'll 
>look into it further.
>
>Dr. Dahlquist, would you mind also telling us about installing the 
>distributable when reporting the results of the test? With any luck, 
>it may be a very simple installation that won't be too much of an 
>inconvenience. Sorry again that I can't test this myself.
>
>Don Murphy
>
>
>
>From: John David N. Dionisio <do...@lm...>
>To: xml...@li...
>Sent: Wed, September 15, 2010 4:46:06 PM
>Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?
>
>Greetings all,
>
>I have some follow-up questions on this:
>
>- Does this mean that Microsoft no longer includes the Jet database 
>library (or whatever they call it now) as a default part of Windows 7?
>
>- Under what Odbc-Jdbc bridge name would we be able to find this 
>redistributable version of the driver?
>
>- I agree with Kam that, if this turns out to be the only way to go, 
>it would be a serious inconvenience for our potential users.  Might 
>we be able to include the .dll as part of our own 
>distribution?  (with proper acknowledgments, of course)
>
>Don, please continue to investigate other possible solutions while 
>Dr. Dahlquist gives the current one a shot.  Thanks!
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Loyola Marymount University
>
>
>On Sep 15, 2010, at 3:54 PM, Kam Dahlquist 
><<mailto:kda...@lm...>kda...@lm...> wrote:
>
>>Hi,
>>
>>I'll give this a try tonight and see what happens.  This would be 
>>disappointing, though since anyone who wants to use our program on 
>>Windows 7 will need this patch.
>>
>>Best,
>>Dr. D
>>
>>At 02:51 PM 9/15/2010, Don Murphy wrote:
>>>I've started searching for information on what could solve the 
>>>issues GMBuilder has been having when loading through Windows 7. 
>>>I'm not sure if this may deal with our issue, but running the 
>>>Microsoft Access Database Engine 2010 Redistributable (which can 
>>>be found here: 
>>><http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D 
>>>) on the Windows 7 machine before attempting another export might 
>>>solve the problem.
>>>
>>>Hope this helps.
>>>
>>>Don Murphy
>
>

- I'm not sure, but judging by the numerous similar complaints I've found, that 
might be the case, especially if this fixes it.

- It should use the same Odbc-Jdbc bridge name as we thought it would use and is 
currently used in gmbuilder for Windows 7.

- As I haven't used the redistributable myself, I don't have an immediate answer 
for driver distribution through our release. I'll look into it further.

Dr. Dahlquist, would you mind also telling us about installing the distributable 
when reporting the results of the test? With any luck, it may be a very simple 
installation that won't be too much of an inconvenience. Sorry again that I 
can't test this myself.
Don Murphy

________________________________
From: John David N. Dionisio <do...@lm...>
To: xml...@li...
Sent: Wed, September 15, 2010 4:46:06 PM
Subject: Re: [XMLPipeDB-developer] Potential GMBuilder Windows 7 fix?

Greetings all,

I have some follow-up questions on this:

- Does this mean that Microsoft no longer includes the Jet database library (or 
whatever they call it now) as a default part of Windows 7?

- Under what Odbc-Jdbc bridge name would we be able to find this redistributable 
version of the driver?

- I agree with Kam that, if this turns out to be the only way to go, it would be 
a serious inconvenience for our potential users.  Might we be able to include 
the .dll as part of our own distribution?  (with proper acknowledgments, of 
course)

Don, please continue to investigate other possible solutions while Dr. Dahlquist 
gives the current one a shot.  Thanks!

John David N. Dionisio, PhD
Associate Professor, Computer Science
Loyola Marymount University

On Sep 15, 2010, at 3:54 PM, Kam Dahlquist <kda...@lm...> wrote:

Hi,
>
>I'll give this a try tonight and see what happens.  This would be disappointing, 
>though since anyone who wants to use our program on Windows 7 will need this 
>patch.
>
>Best,
>Dr. D
>
>At 02:51 PM 9/15/2010, Don Murphy wrote:
>
>I've started searching for information on what could solve the issues GMBuilder 
>has been having when loading through Windows 7. I'm not sure if this may deal 
>with our issue, but running the Microsoft Access Database Engine 2010 
>Redistributable (which can be found here: 
>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D
> ) on the Windows 7 machine before attempting another export might solve the 
>problem.
>>
>>Hope this helps.
>> 
>>Don Murphy
>>
>>

Greetings all,

I have some follow-up questions on this:

- Does this mean that Microsoft no longer includes the Jet database library (or whatever they call it now) as a default part of Windows 7?

- Under what Odbc-Jdbc bridge name would we be able to find this redistributable version of the driver?

- I agree with Kam that, if this turns out to be the only way to go, it would be a serious inconvenience for our potential users.  Might we be able to include the .dll as part of our own distribution?  (with proper acknowledgments, of course)

Don, please continue to investigate other possible solutions while Dr. Dahlquist gives the current one a shot.  Thanks!

John David N. Dionisio, PhD
Associate Professor, Computer Science
Loyola Marymount University

On Sep 15, 2010, at 3:54 PM, Kam Dahlquist <kda...@lm...> wrote:

> Hi,
> 
> I'll give this a try tonight and see what happens.  This would be disappointing, though since anyone who wants to use our program on Windows 7 will need this patch.
> 
> Best,
> Dr. D
> 
> At 02:51 PM 9/15/2010, Don Murphy wrote:
>> I've started searching for information on what could solve the issues GMBuilder has been having when loading through Windows 7. I'm not sure if this may deal with our issue, but running the Microsoft Access Database Engine 2010 Redistributable (which can be found here: http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D ) on the Windows 7 machine before attempting another export might solve the problem.
>> 
>> Hope this helps.
>>  
>> Don Murphy
>> 
> 

Hello Everyone,
I've completed an export for a new database built on GenMAPP Builder 2.0b51, specifically for Mycobacterium tuberculosis, while examining the results in access indeed this new version has retained the RV ordered locus and everything appears in order, however the Tally Engine that I ran still indicates the same results as the former GenMAPP builder, and needs to be updated.
Thank you

--- On Sun, 9/12/10, John David N. Dionisio <do...@lm...> wrote:

From: John David N. Dionisio <do...@lm...>
Subject: Re: [XMLPipeDB-developer] OrderedLocusNames for Mycobacterium
To: "xml...@li..." <xml...@li...>
Date: Sunday, September 12, 2010, 6:59 PM

Greetings,

I've released GenMAPP Builder 2.0b51 to SourceForge; this version seeks to implement the changes described for M. tuberculosis.

Not mentioned in the release notes is also a possible compatibility fix for Windows 7.  Please give this release a try on that operating system also and let me know if it runs.  Try the standard gmbuilder.bat first, and if that doesn't work, try gmbuilder-32bit.bat.  Once we have some definites, I can document it in the next release.

Thanks and enjoy!

John David N. Dionisio, PhD
Associate Professor, Computer Science
Loyola Marymount University

On Sep 8, 2010, at 9:30 PM, Kam Dahlquist wrote:

> Hi,
> 
> Kevin and I looked into the OrderedLocusNames for Mycobacterium 
> tuberculosis today.  We need to revise the query to retreive the IDs.
> 
> We only want to take the IDs of type "orded locus" that begin with 
> "Rv" these IDs are usually followed by four numbers, and sometimes by 
> a letter like a or c, or maybe a .# like .1
> 
> We don't want to take the type "ORF" or type "synonym".
> 
> I think it's also safe to say that we want the default UniProt 
> profile to just take IDs of type "ordered locus" and not "ORF" or "synonym".
> 
> Thanks,
> Kam

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Hi,

I'll give this a try tonight and see what happens.  This would be 
disappointing, though since anyone who wants to use our program on 
Windows 7 will need this patch.

Best,
Dr. D

At 02:51 PM 9/15/2010, Don Murphy wrote:
>I've started searching for information on what could solve the 
>issues GMBuilder has been having when loading through Windows 7. I'm 
>not sure if this may deal with our issue, but running the Microsoft 
>Access Database Engine 2010 Redistributable (which can be found 
>here: 
><http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D>http://www.microsoft.com/downloads/en/details.aspx?FamilyID=C06B8369-60DD-4B64-A44B-84B371EDE16D) 
>on the Windows 7 machine before attempting another export might 
>solve the problem.
>
>Hope this helps.
>
>Don Murphy
>

Hi,

I've tested gmb2b51 on Windows 7 and here is what I found:

1.  Program launched OK from the gmbuilder.bat.  The first error 
window that reports that the data configuration was not found was too 
small to contain the entire error message--not sure what controls 
that, it's a cosmetic thing.

2.  Imports of UniProt XML, GO XML, GO processing and GOA import all 
seemed to be OK.

3.  I encountered an issue when I tried to export a gdb.  Screenshot 
attached.  What appeared to me is that it only showed the UniProt, 
OrderedLocusNames, and GO tables as ones that could be exported, I 
tried to decipher the console window, and it looks like it had 
trouble connecting to the database at this point.

4.  The gmbuilder-32bit.bat file did not open the program at all.

Cheers,
Kam

At 05:59 PM 9/12/2010, John David N. Dionisio wrote:
>Greetings,
>
>I've released GenMAPP Builder 2.0b51 to SourceForge; this version 
>seeks to implement the changes described for M. tuberculosis.
>
>Not mentioned in the release notes is also a possible compatibility 
>fix for Windows 7.  Please give this release a try on that operating 
>system also and let me know if it runs.  Try the standard 
>gmbuilder.bat first, and if that doesn't work, try 
>gmbuilder-32bit.bat.  Once we have some definites, I can document it 
>in the next release.
>
>Thanks and enjoy!
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Loyola Marymount University

Greetings,

I've released GenMAPP Builder 2.0b51 to SourceForge; this version seeks to implement the changes described for M. tuberculosis.

Not mentioned in the release notes is also a possible compatibility fix for Windows 7.  Please give this release a try on that operating system also and let me know if it runs.  Try the standard gmbuilder.bat first, and if that doesn't work, try gmbuilder-32bit.bat.  Once we have some definites, I can document it in the next release.

Thanks and enjoy!

John David N. Dionisio, PhD
Associate Professor, Computer Science
Loyola Marymount University

On Sep 8, 2010, at 9:30 PM, Kam Dahlquist wrote:

> Hi,
> 
> Kevin and I looked into the OrderedLocusNames for Mycobacterium 
> tuberculosis today.  We need to revise the query to retreive the IDs.
> 
> We only want to take the IDs of type "orded locus" that begin with 
> "Rv" these IDs are usually followed by four numbers, and sometimes by 
> a letter like a or c, or maybe a .# like .1
> 
> We don't want to take the type "ORF" or type "synonym".
> 
> I think it's also safe to say that we want the default UniProt 
> profile to just take IDs of type "ordered locus" and not "ORF" or "synonym".
> 
> Thanks,
> Kam

Hi,

Kevin and I looked into the OrderedLocusNames for Mycobacterium 
tuberculosis today.  We need to revise the query to retreive the IDs.

We only want to take the IDs of type "orded locus" that begin with 
"Rv" these IDs are usually followed by four numbers, and sometimes by 
a letter like a or c, or maybe a .# like .1

We don't want to take the type "ORF" or type "synonym".

I think it's also safe to say that we want the default UniProt 
profile to just take IDs of type "ordered locus" and not "ORF" or "synonym".

Thanks,
Kam

Hi,

Thanks, it's working now,

Kam

At 03:57 PM 9/1/2010, John David N. Dionisio wrote:
>Hi Kevin,
>
>That looks like an issue with the Java version that is 
>installed.  Over the summer we switched gmbuilder so that it 
>requires Java 1.6 (sometimes referred to as just Java 6). Make sure 
>you have this version of Java installed then let us know how it goes
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Loyola Marymount University
>
>
>On Sep 1, 2010, at 3:16 PM, Kevin Ramirez 
><<mailto:kev...@ya...>kev...@ya...> wrote:
>
>>Hello,
>>I attempted to open the gmbuilder.bat -2.0b50 and received a quick 
>>message, which i included in the picture attachment, which then 
>>proceeded to close the program.
>>Thanks
>>-Kp
>>
>><1stBug-gmbuilder.jpg>
>>------------------------------------------------------------------------------
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>>
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>>Enter the Intel(R) Threading Challenge 2010.
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>

Hi Kevin,

That looks like an issue with the Java version that is installed.  Over the summer we switched gmbuilder so that it requires Java 1.6 (sometimes referred to as just Java 6). Make sure you have this version of Java installed then let us know how it goes 

John David N. Dionisio, PhD
Associate Professor, Computer Science
Loyola Marymount University

On Sep 1, 2010, at 3:16 PM, Kevin Ramirez <kev...@ya...> wrote:

> Hello,
> I attempted to open the gmbuilder.bat -2.0b50 and received a quick message, which i included in the picture attachment, which then proceeded to close the program. 
> Thanks
> -Kp
> 
> <1stBug-gmbuilder.jpg>
> ------------------------------------------------------------------------------
> This SF.net Dev2Dev email is sponsored by:
> 
> Show off your parallel programming skills.
> Enter the Intel(R) Threading Challenge 2010.
> http://p.sf.net/sfu/intel-thread-sfd
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