Re: [XMLPipeDB-developer] Uniprot Files now on the Wiki

[John D. N. D. <do...@lm...>]

Hi Kevin,

Sorry it took me until the break to look into this. The issue is that the latest XML has again added a new element (maybe more) that the XMLPipeDB database code does not handle. I will need to update this code then produce a new release. Stand by and I will let you know when it is out.

Specifically, the new element is a 'cofactor' tag. The precise reported error is:

	DefaultValidationEventHandler: [ERROR]: Unexpected element {http://uniprot.org/uniprot}:cofactor Location: line 41 

Because processing aborts at this point, it is not yet known if other new elements exist. As I work to update the database code, I will seek to make sure that we cover everything that is new in this file.

John David N. Dionisio, PhD
Associate Professor, Computer Science
Associate Director, University Honors Program
Loyola Marymount University



> On Feb 10, 2015, at 5:27 PM, Kevin McGee <km...@li...> wrote:
> 
> Dr. Dionisio,
> 
> Both Uniprot Files (The old working file and the new non working file) for L. major are on the wiki at the top of my profile. Hope that this helps.
> 
> 
> Kevin McGee
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