Re: [XMLPipeDB-developer] combined S. aureus gdb finished exporting

[John D. N. D. <do...@lm...>]

Greetings,

I don't think we've specifically coded for this…I'll have to walk through the code to determine what happens when multiple profiles are involved.  I suspect it may be the last profile in the list, because this would be the last piece of code to write the link-out pattern.  But this will need review.

John David N. Dionisio, PhD
Associate Professor, Computer Science
Associate Director, University Honors Program
Loyola Marymount University



On Oct 10, 2014, at 2:35 PM, Kam Dahlquist <kda...@lm...> wrote:

> Hi,
> 
> I just wanted to let everyone know that the combined S. aureus 
> MRSA252 and COL gene database finished exporting.  A quick look at 
> the gdb in access looks like the tables are full.  Sarah can finish 
> the testing report the next time that she comes in.
> 
> One issue that has come up, however.  How does GenMAPP Builder choose 
> which profile to use the link out for (the link out that is listed in 
> the Systems table)?  In this case, it looks like it used the one for 
> MRSA252, which won't work for COL gene IDs.  In the short term, I 
> think we need to change the linkout for MRSA252 to EnsemblBacteria 
> like it is for COL, but in the long term, we probably need to ask the 
> user what they want to use in the wizard for exporting.
> 
> Best,
> Kam
> 
> 
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