Re: [XMLPipeDB-developer] attempt to import entire UniProt xml failed

[John D. N. D. <do...@lm...>]

Greetings,

The direct error reported turned out to be an XSD update, and that went fine upon testing, but then I encountered another error that has turned out to be less straightforward to resolve.  So this issue is still in progress; I added the gory details as a follow-up to the entry in your narrative page:

	http://xmlpipedb.sourceforge.net/wiki/index.php/Kdahlquist#2014-06-22

I will look at this fresh on Monday and report back on how things go.

John David N. Dionisio, PhD
Associate Professor, Computer Science
Associate Director, University Honors Program
Loyola Marymount University



On Jun 19, 2014, at 3:02 PM, Dahlquist, Kam D. <Kam...@lm...> wrote:

> Hi,
> 
> I attempted to import the entire UniProt XML, downloaed from here: http://www.uniprot.org/downloads using gmb2b78.  The import failed after just a few seconds upon encountering an unexpected element, molecule, (as far as I can tell).  Screenshots of the console window with messages are on my narrative page here:
> 
> http://xmlpipedb.sourceforge.net/wiki/index.php/Kdahlquist#2014-06-19
> 
> Note that the individual Vibrio and Helicobacter pylori proteome XML files from this release imported just fine.
> 
> Best,
> Kam
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