[XMLPipeDB-developer] Gene ID names figured out

[Kevin M. <km...@li...>]

Hey Dr. Dionisio,

I think I have pretty much got the ID patterns figured out. Looking on
GeneDB and Ensembl Protists, they have the pattern LmjF.##.#### as the
correct way of formatting the id name. However, under synonyms, they have
another pattern LmjF##.#### and have marked it as a previously known name.
I think that these are the two patterns we want: the current up to date
pattern and the previously known pattern just in case the user of the
database has older data that was named in this way. This means that we
should get rid of the pattern LmjF_##_#### entirely and add LmjF##.#### in
its place.

Also, typing in the random straggler names on Uniprot, they have synonymous
names that follow the patterns in the coded in the database already:

L1063.01 =     LmjF23.0270 L3640.11  =    LmjF21.1780
L374.02    =    LmjF19.0670
LMAJ006828= LmjF06.1270
lmj_1130 =     LmjF21.1780


I don't know if we should change there names or what we should do with
them, but we do know they code for actual genes and it gives us the option
of including them in the coding without having to make too many
modifications.

Let me know if you have any questions or want to meet to talk about it!

-Kevin McGee