Re: [XMLPipeDB-developer] H pylori generic profile issue gmb2b71

[Kam D. <kda...@lm...>]

Hi,

I don't know how 210 became the taxon ID in the code.  I checked the 
ReadMe for the released version of the gdb and the tax ID for that 
version is 85962.

I've gone through all the ReadMe's to double-check the tax IDs that I 
have listed on my user page on the BiolDB wiki 
here: 
https://xmlpipedb.cs.lmu.edu/biodb/fall2013/index.php/User:Kdahlquist#UniProt_XML

I only anticipate issues with changing tax IDs for E. coli, 
Arabidopsis, and Mycobacterium tuberculosis.

Is it possible that when Rich (I think it was him) made the change to 
putting in tax IDs instead of species names, he put in the wrong tax 
ID?  If so, it's probably worth it to check all the tax IDs for the 
custom profiles and make sure they match what I have put on that 
page.  I think there may be issues with E. coli, Arabidopsis, and M. 
tuberculosis, though.

Best,
Kam

At 11:37 PM 11/22/2013, you wrote:
>I checked the custom species profile in our code and the taxon ID 
>that is associated with H. pylori is 210.  This may be another case 
>of a changed taxon ID, seeing as the data reports 85962 instead, as 
>seen in your attached screenshots.
>
>John David N. Dionisio, PhD
>Associate Professor, Computer Science
>Associate Director, University Honors Program
>Loyola Marymount University
>
>
>
>On Nov 22, 2013, at 4:45 PM, Kam Dahlquist <kda...@lm...> wrote:
>
> > Hi,
> >
> > Just started an export of H. pylori.  There were two profiles 
> that showed up, both with the same taxon ID, both said they were 
> generic profiles.  I'm attaching 2 screenshots.
> >
> > Best,
> > Kam
> > 
> <gmb2b71_export_genericprofile1.jpg><gmb2b71_export_genericprofile2.jpg>------------------------------------------------------------------------------
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