Re: [XMLPipeDB-developer] GM Builder 2.0b66 verification underway

[Richard B. <rbr...@gm...>]

Additionally:

Could also be the Mtuber xml source that is causing problems for tally
engine which also could be affected by the profile customization...

More later after I spend some cycles on IxD.

RB

On Tue, Dec 20, 2011 at 10:35 AM, Richard Brous <rbr...@gm...> wrote:

> 12/19/2011 - 12/20/2011
>
> *Mycobacterium smegmatis*
> Created new single species GDB and Postgre db (from latest downloaded
> source)
> Verified with Tally Engine that all xml tags were imported into Postgre as
> records (attached ss)
> GDB file size 25,824KB
>
> *Mycobacterium tuberculosis H37Rv*
> Created new single species GDB and Postgre db (from latest downloaded
> source)
> Tally Engine verifies that there is an issue with Ordered Locus: wrong
> count and Ordered Locus listed twice (attached ss)
> GDB  file size 23,404KB
>
> *Msmeg and Mtuber dual species GDB and Postgre db created from above
> source (go-obo imported and processed only once)*
> Tally Engine screen shots of both species compared to total records (need
> to rethink tally engine implementation?)
> single species Msmeg GDB export file size 20,580KB (much smaller, likely
> missing records!!!)
> single species Mtuber GDB export file size 23,404KB (identical byte size)
>
>
> NEXT STEPS:
>
> *Msmeg*
> Compare GDB tables from single species db export and two species db export
> (expect to find records or something missing)
> Verify record counts in Postgre db by SQL queries
> Verify no Mtuber records were exported into Msmeg GDB
>
> Mtuber
> Tally engine error only occurs with Mt, so likely something to do with the
> profile customization (tally engine code works fine with Ms)
> Verify record counts in Postgre db by SQL queries
> Verify no Msmeg records were exported into Mtuber GDB
>
> ONCE ABOVE SOLVED
>
> 1. Export Msmeg and Mtuber into 2 species GDB and ensure all records for
> each species exist
> 2. Introduce a third species into Postgre to ensure that if its not
> selected, it isn't exported
>
>
>
>
>