Re: [XMLPipeDB-developer] GenMAPP multitaxon support - CMSI 486T

[Richard B. <rbr...@gm...>]

saw latest dondi submit, ui stuff looks great.

recompiled and starting fresh this morning after I deal with a dead car
battery situation.

rb

On Thu, Aug 4, 2011 at 12:09 AM, Richard Brous <rbr...@gm...> wrote:

> Wednesday 8/3/11 progress:
>
> 1. After following the ExportPanel1.java ground zero code of:
> databaseProfile.setSelectedSpeciesProfile( selectedProfile );
>
> I found the method in DatabaseProfile.java plus a getter method;
> SpeciesProfile setSelectedSpeciesProfile( speciesProfile ) and
> SpeciesProfile getSelectedSpeciesProfile( speciesProfile )
>
> I created two new methods that each handle List<Object> of SpeciesProfiles
> argument instead of a single SpeciesProfile; setSelectedSpeciesProfiles and
> getSelectedSpeciesProfiles.
>
> This enabled the ExportPanel1 ground zero code to become:
> databaseProfile.setSelectedSpeciesProfiles(selectedSpecies);
>
> 2. public static void export() on line 104 in ExportToGenMAPP.java
>
> On line 107 ExportGoData is instantiated which I found in ExportGoData.java
> and calls a method: *public* *void* export(*char* chosenAspect, *int*taxon).
>
> Within export, taxon id is required for another method: *private* *void*populateGoTables(
> *char* chosenAspect, *int* taxon).
>
> Within populateGoTables, taxon id is required for another method: *private
> * *void* populateUniprotGoTableFromSQL(*char* chosenAspect, *int* taxon).
>
> But, if the export to GDB process starts off with exporting GO data,
> doesn't it only need to do that once no matter how many species are
> selected? As you probably realize, I'm leading towards not having to iterate
> through this for each taxon id if possible.
>
> Also, how does the export actually work? How are GO ids and UniProt ids
> related within the table?
>
> Thanks!
>
> Richard
>
>