Re: [XMLPipeDB-developer] GenMAPP multitaxon support - CMSI 486T

[Richard B. <rbr...@gm...>]

Wednesday 8/3/11 progress:

1. After following the ExportPanel1.java ground zero code of:
databaseProfile.setSelectedSpeciesProfile( selectedProfile );

I found the method in DatabaseProfile.java plus a getter method;
SpeciesProfile setSelectedSpeciesProfile( speciesProfile ) and
SpeciesProfile getSelectedSpeciesProfile( speciesProfile )

I created two new methods that each handle List<Object> of SpeciesProfiles
argument instead of a single SpeciesProfile; setSelectedSpeciesProfiles and
getSelectedSpeciesProfiles.

This enabled the ExportPanel1 ground zero code to become:
databaseProfile.setSelectedSpeciesProfiles(selectedSpecies);

2. public static void export() on line 104 in ExportToGenMAPP.java

On line 107 ExportGoData is instantiated which I found in ExportGoData.java
and calls a method: *public* *void* export(*char* chosenAspect, *int*taxon).

Within export, taxon id is required for another method: *private*
*void*populateGoTables(
*char* chosenAspect, *int* taxon).

Within populateGoTables, taxon id is required for another method: *private*
*void* populateUniprotGoTableFromSQL(*char* chosenAspect, *int* taxon).

But, if the export to GDB process starts off with exporting GO data, doesn't
it only need to do that once no matter how many species are selected? As you
probably realize, I'm leading towards not having to iterate through this for
each taxon id if possible.

Also, how does the export actually work? How are GO ids and UniProt ids
related within the table?

Thanks!

Richard