Re: [XMLPipeDB-developer] 2/28/11 call notes

[Richard B. <rbr...@gm...>]

>
>   Updates:
>
> 1. Dr. D and I spoke yesterday about the gdb releasing (of which I didn't
> realize that I should have done) and was going to release last night. But I
> will release the rest of the gdb's as they become available.
>
> 2. I reinstalled the java jdk and installed Postgres 8.4 (replaceing 8.3.x)
> on my laptop and now the exports actually start at 1% as expected. I was
> running Postgres version 8.3 instead of the 8.4 version because I wasn't
> able to locate a windows version on the Postgres site hosting current and
> previous versions. It seems for the 8.4.x releases they only decided to keep
> Linux and Solaris flavors. But luckily Dr. D still had the 8.4 win
>  installer on her system which she posted on the wiki for me to grab.
>


>  - So now I can successfully export Mtb gdb although a new problem has
> surfaced where Access (Office 2007) seems to hang when I select a table to
> view... I'll have to verify this behavior on the Mac in the lab to see if it
> is reproducible.
>
> 3. I ran a new export of Mtuberculosis gdb with the new link, verified link
> in systems table and was able to use backpage functionality with GenMAPP. I
> uploaded the gdb to the biodb wiki and informed Dr. D of its existance.
>


>  4. I released GenMAPP 2.0b62 yesterday which included the updated sql
> query, the new search link and updated version string. (And yes I verified
> that my hibernate properties file wasn't in the zip this time=D)
>
> 5. Dr. D and I also spoke about Msmegmatis and the fact that there
> were several sets of import xml files on the Mac. I recall downloading newer
> versions because I thought I had to start over when I was having issues
> exporting. But my memory is so fuzzy about the end of last semester with
> deadlines and finals that I just can't remember for sure exactly how those
> files were used. We are waiting for the review of her export from yesterday
> to decided how to move foward.
>

  Richard

>
>
>
>
> On Mon, Feb 28, 2011 at 2:48 PM, Kam Dahlquist <kda...@lm...> wrote:
>
>> Hi,
>>
>> Here are the notes from today's call.
>>
>> Dr. D
>>
>> 1.  M. tuberculosis:  Rich will make sure that the link out URL for
>> OrderedLocusNames points to Tuberculist at http://tuberculist.epfl.ch/
>>
>> 2.  Once this has been verified, Rich will release b62 with the
>> updates for M. tuberculosis.
>>
>> 3.  Rich will look into problems with his development machine upon
>> advice from Dondi.
>>
>> 4.  Kam will do testing report on M. tuberculosis gdb and update
>> ReadMe to get it ready for release.
>>
>> 5.  Kam will review gdb's from Fall 2010 class, update ReadMe's and
>> get them ready for release.
>>
>> 6.  Kam will export and perform testing reports on previously
>> released species in the following order:  V. cholerae (am not
>> expecting problems), S. aureus, P. aerugenosa,  P. falciparum, E.
>> coli, and A. thaliana with the goal of making sure that all species
>> profiles are working before we move on to  the next major action item.
>>
>> Next call is Monday, 3/7 at 11:00.  Dondi will call Kam's office.
>>
>>
>>
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>
>