Re: [XMLPipeDB-developer] GenMAPP Builder 2.0b43 has been released

[Don M. <djs...@ya...>]

My apologies on the missing source files. I've been using the following sets of source files:

https://www.cs.lmu.edu/biodb/fall2009/index.php/File:MRSA252_2009-11-23.zip for S. aureus
https://www.cs.lmu.edu/biodb/fall2009/index.php/File:Kelia01282010.zip for P. aerugenosa
https://www.cs.lmu.edu/biodb/fall2009/index.php/File:SCbuildresourcesExport3and4.zip for S. cerevisiae

Don Murphy



________________________________
From: John David N. Dionisio <do...@lm...>
To: "xml...@li..." <xml...@li...>
Sent: Sun, April 25, 2010 1:51:29 PM
Subject: Re: [XMLPipeDB-developer] GenMAPP Builder 2.0b43 has been released

Greetings,

Oh, so sorry...I could have sworn I flipped the "Java 1.5" switch.  Since it's pretty much identical, I just overwrote the current file on SourceForge with a Java 1.5-compatible version.  A re-download at this point should get you that version.

I did not find any student links (particularly from Don) to any test files.  In principle, however, this version should work with any current-format files, so I just downloaded a fresh set of P. falciparum for starters.  I zipped the UniProt, GO, and OBO-XML files and uploaded the file to the biodb2009 wiki:

    https://www.cs.lmu.edu/biodb/fall2009/images/0/0a/Goa-database-test-20100425.zip

In case the direct link doesn't work, there is also a link to it on my biodb2009 user page:

    https://www.cs.lmu.edu/biodb/fall2009/index.php/User:Dondi

If this first test goes well, we can download additional species, culminating perhaps in yeast.

John David N. Dionisio, PhD
Assistant Professor, Computer Science
Loyola Marymount University


On Apr 25, 2010, at 10:34 AM, Dahlquist, Kam D. wrote:

> Hi,
> 
> Unfortunately, I cannot run this build.  I get the error "Exception in thread "main" java.lang.UnsupportedClassVersionError: Bad version number in .class file" when I try to run it either from the .bat file or by invoking it from the command line.  I'm attaching a screenshot.
> 
> Also, when the new version is up--would you let me know which species and which versions of the source files I should be using for testing?  Please provide me with a  link to the UniProt/GO/GOA files that were used in testing so I can use them myself.
> 
> Thanks,
> Dr. D


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