Re: [XMLPipeDB-developer] Fwd: GO termdb import results

[John D. N. D. <do...@lm...>]

Yes, thanks, I was planning on doing that.  I'd actually forgotten  
about the dev list, and was thinking last night that we should come up  
with a solution for recording these dev-related messages.  I only  
remembered this when you sent in the new release bug  :-/

John David N. Dionisio, PhD
Assistant Professor, Computer Science
Loyola Marymount University


On Oct 26, 2009, at 9:48 AM, Kam Dahlquist <kda...@lm...> wrote:

> I'm forwarding this to the list so it is archived.
> Kam
>
>> From: "John David N. Dionisio" <do...@lm...>
>> Subject: GO termdb import results
>> Date: Mon, 26 Oct 2009 00:05:45 -0700
>> To: Kam Dahlquist <kda...@lm...>
>> X-Mailer: Apple Mail (2.1076)
>> X-OriginalArrivalTime: 26 Oct 2009 07:05:46.0078 (UTC)
>> FILETIME=[BD66E7E0:01CA560A]
>>
>> Hi Kam,
>>
>> I downloaded and tried to import a GO termdb xml file that was
>> downloaded on Sunday, 10/25/2009.  It had one new tag of which our
>> code was previously unaware, called "data-version" --- for what it's
>> worth, the value therein was 1.1.856.  (i.e., it was <data-
>> version>1.1.856</data-version>)
>>
>> Fortunately, this attribute appeared only once in the entire file, so
>> I was able to delete it initially so I could test the import without
>> recoding (yet).  The file then imported successfully.
>>
>> I double-checked their latest schemas: XSD, DTD, and RelaxNG.  None  
>> of
>> these schemas had this tag defined.  In fact, it looks like none of
>> these schemas have been updated since we last sent them an e-mail
>> reporting this issue (I went all the way to their committed
>> SourceForge repository to make sure I got the latest official  
>> version).
>>
>> So, immediate fix is to do what I've previously done, which is to
>> manually add this tag to our own GO database DTD, and re-run xsd2db.
>> That can easily be done before next week.  However, it does show that
>> this issue still exists.
>>
>> John David N. Dionisio, PhD
>> Assistant Professor, Computer Science
>> Loyola Marymount University
>>
>
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