Re: [XMLPipeDB-developer] gmb2b33-debugging stuck in loop

[Kam D. <kda...@lm...>]

Hi,

The P. aerugenosa export finished with full GO tables and all relationship 
tables built.  I did a quick visual inspection of the tables in the gdb and 
they looked OK.

I will submit a brief report on the SourceForge wiki, but I don't want to 
do too much testing because I want the students in the class to do it.

I'm going to test an export with Mycobacterium tuberculosis now to see how 
it performs with a different species.

Cheers,
Kam

At 12:13 AM 8/13/2009, John David N. Dionisio wrote:
>OK, so the "GOA format hypothesis" still holds some water...after some
>closer examination I found other parts in the code that hadn't been
>updated to accommodate the new format, so I adjusted accordingly.  I
>refactored a bit also, so that this GOA parsing can be tested
>separately, using a test file that includes GOA lines in multiple
>formats.  That test now returns GOA data from the truncated file that
>you sent, so here's hoping.
>
>I haven't touched the relationship code at all, so that issue is still
>pending, depending on the results of this next export.  Since you got
>relationship tables before, this last issue might be due to the
>incomplete adjustment of the GOA code to the new format.  If GO rows
>show up but not relationship rows, then this suggests a separate
>issue.  We'll see what shows up.
>
>The new release is 2.0b34, and should be available by the time you
>read this.  Rinse and repeat...  :)
>
>John David N. Dionisio, PhD
>Assistant Professor, Computer Science
>Loyola Marymount University