Re: [XMLPipeDB-developer] gmb2b33-debugging stuck in loop

[Dahlquist, K. D. <kda...@lm...>]

Hi,
 
Sorry, here is the log. 
 
For this build, it's not just the GOA, there were no relationship tables built between, for example, UniProt-RefSeq, either.
 
I'm attaching the first thirty rows of the GOA file.
 
Kam

________________________________

From: John David N. Dionisio [mailto:do...@lm...]
Sent: Wed 8/12/2009 13:06
To: <xml...@li...>
Subject: Re: [XMLPipeDB-developer] gmb2b33-debugging stuck in loop


Hi Kam,

Thanks for the update...would you send the gmbuilder.log over?  I really thought that it was the GOA format.  For good measure, maybe copy/paste a few lines from the actual GOA file you're using as well, in case the issue still lies there.  At least we know that the slow performance last time really was due to the logging.

John David N. Dionisio, PhD
Assistant Professor, Computer Science
Loyola Marymount University


On Aug 12, 2009, at 12:51 PM, "Dahlquist, Kam D." <kda...@lm...> wrote:



	Hi,
	 
	I ran the new build and it finished, but with no relationship tables at all and the GO tables were still unpopulated.  Specifically,
	 
	GeneOntology: empty
	GeneOntologyCount: 3 records
	GeneOntologyTree: 3 records (the roots, Biological Process, etc.)
	UniProt-GeneOntology: empty
	UniProt-GOCount: 4 records
	 
	Kam