Re: [XMLPipeDB-developer] gmb2b33-debugging stuck in loop

[John D. N. D. <do...@lm...>]

Hi Kam,

Thanks for the update...would you send the gmbuilder.log over?  I  
really thought that it was the GOA format.  For good measure, maybe  
copy/paste a few lines from the actual GOA file you're using as well,  
in case the issue still lies there.  At least we know that the slow  
performance last time really was due to the logging.

John David N. Dionisio, PhD
Assistant Professor, Computer Science
Loyola Marymount University


On Aug 12, 2009, at 12:51 PM, "Dahlquist, Kam D." <kda...@lm...>  
wrote:

> Hi,
>
> I ran the new build and it finished, but with no relationship tables  
> at all and the GO tables were still unpopulated.  Specifically,
>
> GeneOntology: empty
> GeneOntologyCount: 3 records
> GeneOntologyTree: 3 records (the roots, Biological Process, etc.)
> UniProt-GeneOntology: empty
> UniProt-GOCount: 4 records
>
> Kam
>