WGSSAT provides a Graphical User Interface pipeline to mine and characterize SSR from Whole genome data. This pipeline integrates prediction of genes, ncRNA, repeats and SSR from whole genome assembly and mapping of these predicted SSR on to the genome (classified according to genes, ncRNA, repeats, exonic and intronic region) along with primer designing and mining of cross-species amplification markers. The mining of SSRs from whole genome provides valuable information on the abundance of SSRs in various genomic regions and will also facilitate the development of markers for genetic analysis and related applications, such as marker-assisted breeding and linkage mapping.

Features

  • Gene Prediction
  • RNA Prediction
  • SSR mining
  • Repeat Mining
  • Gene Annotation
  • SSR Annotation and mapping on genomic features
  • Primer designing
  • Mining of cross-species amplification markers

Project Samples

WGSSAT-NBFGR Features WGSSAT-pipeline

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License

Creative Commons Attribution License

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Registered

2016-02-26
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