From: Louis Letourneau <louis.letourneau@ma...> - 2012-07-06 11:20:50
I'm trying to assemble pacbioToCA error corrected pacbio reads. The
genome is ecoli.
The correction went very wellm but when I tried to assemble I keep
getting this error:
safeWrite()-- EXPECTED 4172, ended up at 4636
buildUnitigs: AS_UTL_fileIO.C:83: void AS_UTL_safeWrite(FILE*, const
void*, const char*, size_t, size_t): Assertion `AS_UTL_ftell(file) ==
The numbers never change.
This is being run on a linux cluster (single node) which has luster as
it's underlying file system.
I tried with another installation on another server which is also linux,
but the underlying is NFS.
On the NFS server it worked well.
I saw the code of safeWrite explaining problems with FreeBSD, but I'm
not using this.
Wny ideas of what's going on?
I tried, copying my executables from one server to the other and it
didn't change anything. I don't understand why fwrite would behave this
way except if it was a buffer problem.
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