Re: [wgs-assembler-users] Failure at the installation of the wgs-8.3

[Brian W. <th...@gm...>]

Hi-

Edit kmer/Make.include to remove (or comment out) the two lines with
'atac-driver' and 'seatac' in them.  These aren't used by the assembler,
and this will make 'make' (ha, ha) not build them.

b



On Tue, Dec 22, 2015 at 12:11 PM, gabriel goldstein <gnr...@gm...>
wrote:

> Hello,
>
> My name is Gabriel Goldstein and I'm trying to install the assembler in a
> Ubuntu 15.04 system, with gcc 4.9.2 and GNU Make 4.0.
> However, whenever I go into wgs-8.3rc2/kmer/ and use the command make
> install I get the following error:
>
> ln -f
> /home/bernardo/programs/wgs-8.3rc2/kmer/atac-driver/alignOverlap/overlap-process.C
> /home/bernardo/programs/wgs-8. 3rc2/kmer/atac-driver/alignOverlap/overlap-process1.C
> make: execvp: ln: Too many levels of symbolic links
> atac-driver/alignOverlap/Make.include:29: recipe for target
> 'atac-driver/alignOverlap/overlap-process1.C' failed
> make: *** [atac-driver/alignOverlap/overlap-process1.C] Error 12
>
> I've tried using an older version of GNU Make (3.8), but the same problem
> remains. Are there any known issues related with the new version of gcc?
> This error message really tells me nothing, is it commom?
>
> Thanks in advance for the attention,
>
> Gabriel Goldstein
>
>
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