From: Alex B. <aj...@gm...> - 2015-08-27 17:18:09
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Hi Celera Community, I'm using celera 8.3 and getting an error message I can't seem to make heads or tails of: ----------------------------------------START Thu Aug 27 08:13:38 2015 /global/common/genepool/jgi/assemblers/celera/8.3/Linux-amd64/bin/overlapStore -u /global/homes/a/ajbrandt/bscratch/h/celera_attempt/h_parallel/hp.ovlStore /global/homes/a/ajbrandt/bscratch/h/celera_attempt/h_parallel/3-overlapcorrection/hp.erates > /global/homes/a/ajbrandt/bscratch/h/celera_attempt/h_parallel/3-overlapcorrection/overlapStore-update-erates.err 2>&1 ----------------------------------------END Thu Aug 27 08:14:17 2015 (39 seconds) ERROR: Failed with signal HUP (1) ================================================================================ runCA failed. ---------------------------------------- Stack trace: at /usr/common/jgi/assemblers/celera/8.3/Linux-amd64/bin/runCA line 1649. main::caFailure('failed to apply the overlap corrections', '/global/homes/a/ajbrandt/bscratch/h/celera_attempt/h...') called at /usr/common/jgi/assemblers/celera/8.3/Linux-amd64/bin/runCA line 4569 main::overlapCorrection() called at /usr/common/jgi/assemblers/celera/8.3/Linux-amd64/bin/runCA line 6557 ---------------------------------------- Last few lines of the relevant log file (/global/homes/a/ajbrandt/bscratch/h/celera_attempt/h_parallel/3-overlapcorrection/overlapStore-update-erates.err): ERROR: iNum 291211181897 != orig->ovs.numOverlapsTotal 418401494276 I get that there must be some discrepancy between iNum and the number of total overlaps, but I have no idea how to fix the problem (what steps to rerun, etc). Thanks Alex |