[wgs-assembler-users] polishing assemblies made with MHAP

[Waldbieser, G. <Geo...@AR...>]

MHAP in wgs-8.2 can utilize PacBio fastq files (extracted from .hd5 files) to self-correct and assemble. Is there a way to feed the pairwise alignments into quiver to polish the assembly? Is there a better method for polishing?

Geoff
________________________________
Geoffrey C. Waldbieser
Research Molecular Biologist
USDA, ARS, Warmwater Aquaculture Research Unit
141 Experiment Station Road
Stoneville, MS 38776




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