Re: [wgs-assembler-users] Celera Assembly : segmentation fault

[Brian W. <th...@gm...>]

Hi-

"-dumpfastaseq"?  What version are you using?  The usage for the latest
versions (all of the 8.x series) is "gatekeeper -dumpfasta <out-prefix>
*.gkpStore".  Do any of the other dumps work?

b



On Sat, Jan 10, 2015 at 6:37 AM, Arpita Ghosh - Xcelris <
arp...@xc...> wrote:

>   Dear User
>
>
> I am using Celera assembler latest version but i am facing a problem in
> one step as mentioned below.
> After runCA i am running gatekeeper -dumpfastaseq genome.gkpStore >
> gatekeeper.fasta and getting segmentation fault.
>
> I am user Server having specification of *64 core, 1TB RAM and AMD6378,
> 2.4GHz processor. *The data input is Miseq PE 90 Gb, NextSeq MP 100 Gb
> and 454 SG and PE of 2 Gb.
>
>
> Can you suggest what might be the reason of the segmentation fault and how
> can i come over it.
>
> --
>
> Regards,
>
> Arpita Ghosh
>
> Scientist
>
> Xcelris Labs Limited
>
> Old Premchandnagar Road,
>
> Opp. Satyagrah Chhavani,
>
> Bodakdev, Ahmedabad-380015 India.
>
> Tel:+91-79-66197777/66311114
>
> Fax:+91-79-66309341
>
> Email: arp...@xc...
>
> www.xcelrisgenomics.com
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