From: Arpita G. - X. <arp...@xc...> - 2015-01-10 11:41:54
|
<html> <head> <meta http-equiv="content-type" content="text/html; charset=ISO-8859-1"> </head> <body style="font-size: 12px; background-image: url('http://202.131.101.226/stationary/xcelris.jpg'); color: #000000; background-repeat: repeat-x; font-family: arial, verdana, tahoma, Times; margin-left: 10px; margin-right: 0px; margin-top: 100px; margin-bottom: 0px" background="file:///D%3A/My%20Documents/Thunderbird%20-%20Arpita/"> <div> Dear User<br> <br> <br> I am using Celera assembler latest version but i am facing a problem in one step as mentioned below.<br> After runCA i am running gatekeeper -dumpfastaseq genome.gkpStore > gatekeeper.fasta and getting segmentation fault.<br> <br> I am user Server having specification of <b>64 core, 1TB RAM and AMD6378, 2.4GHz processor. </b>The data input is Miseq PE 90 Gb, NextSeq MP 100 Gb and 454 SG and PE of 2 Gb.<b><br> <br> <br> </b>Can you suggest what might be the reason of the segmentation fault and how can i come over it.<b><br> </b></div> <br> <div class="moz-signature">-- <br> <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"> <meta name="ProgId" content="Word.Document"> <meta name="Generator" content="Microsoft Word 9"> <meta name="Originator" content="Microsoft Word 9"> <link rel="File-List" href="./Long-Abellon_files/filelist.xml"> <title>Long-Aventure Signature</title> <!--[if gte mso 9]><xml> <o:DocumentProperties> <o:Author>ithelp.corp</o:Author> <o:LastAuthor>ITHELP SYDNEY</o:LastAuthor> <o:Revision>8</o:Revision> <o:TotalTime>12</o:TotalTime> <o:Created>2009-06-11T09:59:00Z</o:Created> <o:LastSaved>2010-12-01T07:02:00Z</o:LastSaved> <o:Pages>1</o:Pages> <o:Words>37</o:Words> <o:Characters>211</o:Characters> <o:Company>cll</o:Company> <o:Lines>1</o:Lines> <o:Paragraphs>1</o:Paragraphs> <o:CharactersWithSpaces>259</o:CharactersWithSpaces> <o:Version>9.2720</o:Version> </o:DocumentProperties> </xml><![endif]--> <style> <!-- /* Font Definitions */ @font-face {font-family:Tahoma; panose-1:2 11 6 4 3 5 4 4 2 4; mso-font-charset:0; mso-generic-font-family:swiss; mso-font-pitch:variable; mso-font-signature:1627421319 -2147483648 8 0 66047 0;} /* Style Definitions */ p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-parent:""; margin:0in; margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Times New Roman"; mso-fareast-font-family:"Times New Roman";} a:link, span.MsoHyperlink {color:blue; text-decoration:underline; text-underline:single;} a:visited, span.MsoHyperlinkFollowed {color:blue; text-decoration:underline; text-underline:single;} @page Section1 {size:8.5in 11.0in; margin:1.0in 1.25in 1.0in 1.25in; mso-header-margin:.5in; mso-footer-margin:.5in; mso-paper-source:0;} div.Section1 {page:Section1;} --> </style><!--[if gte mso 9]><xml> <o:shapedefaults v:ext="edit" spidmax="1027"/> </xml><![endif]--><!--[if gte mso 9]><xml> <o:shapelayout v:ext="edit"> <o:idmap v:ext="edit" data="1"/> </o:shapelayout></xml><![endif]--> <div class="Section1"> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Regards,<o:p></o:p></span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Arpita Ghosh<br> </span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Scientist<br> </span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Xcelris Labs Limited<br> </span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Old Premchandnagar Road,<o:p></o:p></span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Opp. Satyagrah Chhavani,<o:p></o:p></span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Bodakdev, Ahmedabad-380015 India.<o:p></o:p></span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Tel:+91-79-66197777/66311114<o:p></o:p></span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Fax:+91-79-66309341<o:p></o:p></span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma">Email: <a class="moz-txt-link-abbreviated" href="mailto:arp...@xc...">arp...@xc...</a><o:p></o:p></span></p> <p class="MsoNormal"><span style="font-size:10.0pt;font-family:Tahoma"><a class="moz-txt-link-abbreviated" href="http://www.xcelrisgenomics.com">www.xcelrisgenomics.com</a></span></p> </div> </div> <br>"Please don't print this e-mail unless you really need to. Save Paper, Save Trees"<br>--------------------------------------------------------------------------------<br> <br> Disclaimer<br> The information contained in this e-mail message and / or attachments to it may contain confidential or privileged information of Xcelris Labs Limited and / or its group companies. If you are not the intended recipient, any dissemination, use, review, distribution, printing or copying of the information contained in this e-mail message and / or attachments to it is strictly prohibited. If you have received this communication in error, please notify us by reply e-mail or telephone and immediately delete / destroy the message and / or any attachments permanently.<br> <br> Any views or opinions presented in this e-mail are solely those of the author and do not necessarily represent those of the company. Employees of the company are expressly required not to make defamatory statements and not to infringe or authorize any infringement of copyright or any other legal right by e-mail communication. Any such communication is contrary to company policy and outside the scope of the employment of the individual concerned. The company will not accept any liability in respect of such communication. <br> <br> No employee or associate is authorized to conclude any binding agreement on behalf of Xcelris with another party by e-mail without expressly written confirmation of the company.<br> <br> Warning-Computer viruses can be transmitted via e-mail. The recipient should check this e-mail and any attachment for the presence of viruses. The company has taken every reasonable precaution to minimize this risk, and is not liable for any damage you may sustain as a result of any virus in this e-mail. You should carry out your own virus checks before acting upon the e-mail or any attachment to it.<br> <br> -------------------------------------------------------------------------------- </body> </html> |