From: Manjari D. <man...@gm...> - 2014-12-17 05:50:52
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I am trying to run celera and it has given me following error: runCA failed. ---------------------------------------- Stack trace: at /nfshome/murali/Assembelers/wgs-8.2beta/Linux-amd64/bin/runCA line 1568, <J> line 65. main::caFailure("failed to create the overlap store", "/nfshome/murali/Assembly_results/Celera_results/Celera_grt120"...) called at /nfshome/murali/Assembelers/wgs-8.2beta/Linux-amd64/bin/runCA line 3912 main::createOverlapStore() called at /nfshome/murali/Assembelers/wgs-8.2beta/Linux-amd64/bin/runCA line 6475 ---------------------------------------- Last few lines of the relevant log file (/nfshome/murali/Assembly_results/Celera_results/Celera_grt1200/workDirCelera_grt1200/Peanut_454_grt1200Celera.ovlStore.err): /nfshome/murali/Assembelers/wgs-8.2beta/Linux-amd64/bin/overlapStoreBuild: unknown option '-i'. usage: /nfshome/murali/Assembelers/wgs-8.2beta/Linux-amd64/bin/overlapStoreBuild -o asm.ovlStore -g asm.gkpStore [opts] [-L fileList | *.ovb.gz] -o asm.ovlStore path to store to create -g asm.gkpStore path to gkpStore for this assembly -F f use up to 'f' files for store creation -M m use up to 'm' MB memory for store creation -plc t type of filtering for PLC fragments -- NOT SUPPORTED -obt filter overlaps for OBT -dup filter overlaps for OBT/dedupe -e e filter overlaps above e fraction error -L fileList read input filenames from 'flieList' ---------------------------------------- Failure message: failed to create the overlap store what should i do |