[wgs-assembler-users] Can one Rerun scaffolding with fewer libraries

[Waldbieser, G. <Geo...@AR...>]

Hi,
I have completed an large assembly using a combination of PE reads and jump reads, and would like to compare this with an assembly that does not utilize the longest jump library. However this  is a large assembly with a long runtime. Can one utilize the data from prior stages and rerun cgw and the downstream processes but remove the particular library from the scaffolding process?

Geoff


Geoff Waldbieser
USDA, ARS, Warmwater Aquaculture Research Unit
141 Experiment Station Road
Stoneville, Mississippi 38776
Ofc. 662-686-3593
Fax. 662-686-3567





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