Re: [wgs-assembler-users] error in celera

[Ole K. T. <o.k...@ib...>]

Hi,
what settings have you used for fastqToCA? (Alternatively sffToCA which is most common used for 454 reads).

fastqToCA has Illumina as default technology (-technology option), which only accepts reads shorter than 160 bp. Use ‘-technology 454’ or ‘-technology illumina-long’ if you have longer reads.

Ole

On 28 Nov 2014, at 13:29, Manjari Deshmukh <man...@gm...> wrote:

> Hi 
> I am trying to run celera on 454 FLX
> it is giving error as 
> 
> GKP finished with 20417312 alerts or errors:
> 20417312        # ILL Error: seq longer than longer than gkpShortReadLength bases, truncating.
> 
> ERROR: library IID 1 'Celera_10x' has 100.00% errors or warnings.
> 
> what does it mean?
> 
> Manjari
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