[wgs-assembler-users] Viewing .asm files generated by Celera

[Akshaya R. <ar...@bu...>]

Dear All,

I would like to get information on coverage and the reads that were used to
form a contig/scaffold. Is it right to assume that the .asm file contains
this information? And if it does, I was wondering what package you use to
view these files?

I have been working on installing amos3.1 which has a utility called
hawkeye that can be used to view .asm files. However, I am unable to
configure amos such that it recognizes CA files.I have sent an e-mail to
the amos-help, posted in seqanswers (
http://seqanswers.com/forums/showthread.php?t=47221) with no luck.

Do any of you have any suggestions or have run into similar problems?

I really appreciate your help.
Best,
Akshaya
-- 
Akshaya Ramesh
PhD candidate
Kepler Lab
Laboratory of Computational Immunology
Boston University School of Medicine
72 E Concord Street, Room 504D
Boston, MA 02118