Re: [wgs-assembler-users] /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.10' not found (required by /share/work/lhuang/my_apps/wgs-8.1/Linux-amd64/bin/gatekeeper)

[<wuk...@16...>]

Hi,
I compile it from source code like:

bzip2 -dc wgs-8.1.tar.bz2 | tar -xf - cd wgs-8.1 cd kmer && make install && cd .. cd samtools && make && cd .. cd src && make && cd .. cd .. 

The old gcc version is 4.1.2, and I  install a new version of gcc 4.5.1 on own account.




Best,
 
Kai Wu
 
From: Brian Walenz
Date: 2014-09-23 20:58
To: wuk...@16...
CC: wgs-assembler-users
Subject: Re: [wgs-assembler-users] /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.10' not found (required by /share/work/lhuang/my_apps/wgs-8.1/Linux-amd64/bin/gatekeeper)
Hi-

Did you compile this yourself, or is it the pre-compiled version from sourceforge?  Try compiling yourself.  How old is 'too old'?

b


On Sun, Sep 21, 2014 at 2:14 AM, wuk...@16... <wuk...@16...> wrote:
Dear colleagues,

When I run the command "runCA -p ipagpj029hmc001 -d ipagpj029hmc001_raw useGrid=1 scriptOnGrid=1 doOBT=1 unitigger=bogart /home/kwu/workdir/my_projects/ipag_pj029/data/CA_data/ipagpj029hmc001_1.1.frg /home/kwu/workdir/my_projects/ipag_pj029/data/CA_data/ipagpj029hmc001_2.1.frg" 
After a while, the error massege of ipagpj029hmc001.gkpStore.err is: 
/share/work/lhuang/my_apps/wgs-8.1/Linux-amd64/bin/gatekeeper: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.10' not found (required by /share/work/lhuang/ 
my_apps/wgs-8.1/Linux-amd64/bin/gatekeeper)

I don't know why it? I know my gcc version is too old. So, I install a new version of gcc on my own account. And I set the environment variable: 
export LD_LIBRARY_PATH=/home/kwu/lib:$LD_LIBRARY_PATH 
export LD_LIBRARY_PATH=/home/kwu/lib64:$LD_LIBRARY_PATH 

But, it seem can't find it.



Best,
 
Kai Wu

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