Re: [wgs-assembler-users] wgs-8.1

[Brian W. <th...@gm...>]

I think it is, somehow, finding an older version of 'kmer' and maybe
samtools.  Are those installed system-wide?  If there are other
installations nearby, try compiling from a different directory.  kmer r1960
is definitely included in wgs-8.1.  The symbol EXISTDB_H_VERSION is defined
in libkmer/existDB.H.

Which OS is this on?

b




On Mon, Jun 9, 2014 at 4:39 PM, Corey Wischmeyer <cor...@gm...
> wrote:

> Downloading:
>
>
> http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.1/wgs-8.1.tar.bz2/download
>
> then executing these commands
>
> bzip2 -dc wgs-8.1.tar.bz2 | tar -xf - cd wgs-8.1 cd kmer && make install
> && cd .. cd samtools && make && cd .. cd src && make && cd .. cd ..
>
> Gives an error about samtools no longer being included in the package.
>
> When I then skip to the next bit and run the make and cd I get this
> message:
>
> merTrim.C:46:2: error: #error kmer needs to be updated to at least r1960
>
> merTrim.C:47:2: error: #error note that the kmer svn url changed in mid
> December 2012, the old url does not have r1960
>
> make[1]: *** No rule to make target `bio++.H', needed by `meryl.o'.  Stop.
>
> make: *** [objs] Error 1
>
> Has anyone else run into this behavior? Should I make a ticket?
>
> --
> -Corey Wischmeyer
>
>