[wgs-assembler-users] consensus failures in wgs-8.0

[Waldbieser, G. <Geo...@AR...>]

I have set up an assembly of PacBio long reads and Illumina single reads (84bp to 4kb length) with wgs-8.0. Consensus was partitioned into 122 files. After utgcnsfix errors, I have restarted wgs 3 times (after removing the 5-consensus/consensus.sh file). Each iteration fixes more jobs, but I have finally come to the last job that will not run. This data assembled in a few hours using subversion wgs_r4437.
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Geoffrey C. Waldbieser
Research Molecular Biologist
Warmwater Aquaculture  Research Unit
Agricultural Research Service
United States Department of Agriculture
Stoneville, MS 38776
(662) 686-3593





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