Re: [wgs-assembler-users] Typo in fastqToCA?

[Walenz, B. <bw...@jc...>]

You're not supposed to read the documentation!  :-)

Yes, pacbio-corrected should say the reads are output from pacBioToCA.  Cut-n-paste wins again.  Thanks.


________________________________________
From: Waldbieser, Geoff [Geo...@AR...]
Sent: Wednesday, November 13, 2013 12:55 PM
To: wgs...@li...
Subject: [wgs-assembler-users] Typo in fastqToCA?

Hi,
Under the technology flag in fastqToCA, it lists both pacbio-corrected and pacbio-raw as "uncorrected reads". Is this just a typo or a listing for a future fix?



-technology p      What instrument were these reads generated on ('illumina' is the default):
                       'none'               -- don't set any features; use -feature to set them manually
                       'sanger'             -- reads from dideoxy sequencers
                       '454'                -- reads from 454 Life Sciences; FLX, Titanium, FLX+
                       'illumina'           -- reads from Illumina; GAIIx, MiSeq, HiSeq; shorter than 160bp
                       'illumina-long'      -- reads from Illumina; GAIIx, MiSeq, HiSeq; any length
                       'pacbio-ccs'         -- reads from PacBio; Circular Consensus Sequence (CSS)
                       'pacbio-corrected'   -- reads from PacBio; uncorrected reads
                       'pacbio-raw'         -- reads from PacBio; uncorrected reads

Geoff





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